Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1640 ATGGGTTCATCCAGAGCCTCATGCAGTGTTTCTCTGCTCCAATTGTTCATAGTGGTTTGCCTTCTCTTCCAATGCATTGCCTTTAAAGTACATGCTGACCTGAGCACAACTCTACTTGTAAATGCTTCTGACGCGTCTGGAAGGCCAATACCAGAGACACTTTTTGGCATATTCTTTGAAGAGATCAATCATGCTGGAGCTGGGGGATTGTGGGCTGAGCTTGTGAGCAACAGAGGATTTGAGGCTGGGGGCCCTAACACTCCTTCGAATATTGATCCTTGGTCAAGTATTGGAAATGAATCATTGATAAATGTTGAAACTGATCGTACCTCTTGCTTTGACCGTAATAAGGTTGCACTTCGATTGGAGGTGTCATGTGAGAGCAAAGGTGACACCATCTGCCCAGCTGATGGTGTTGGTGTTTATAACCCTGGTTTCTGGGGCATGAGTATCGAGCAAGGGAAGAAATACAAAGTTGTCTTCTATGTTCGTTCAACTGAATCTCTTAATCTAACAGTTTCATTGACCGGATCAGATGGTGTAGGGAACCTGGCTTCATCTGTGATCACGGGTTCTGCACTTGATTATTCAAATTGGACAGAGGTGGAGACTTTATTGGTTGCCAAGGCAACGAATCCTAACTCAAGACTTCAAttaaccaccaccaccaaaggTGTGATATGGTTGGACCAAGTGTCTGCTATGCCACTGGAGACATATAAGGGACATGGTTTCCGTAGTGAACTTGTGGAAATGCTGGCAGatttgaaaccaaaatttatCAGATTTCCGGGTGGTTGTTACGTTGAAGGAGAATGGTTAAGAAATGCATTTCGATGGAAAGCAACCGTTGGACCATGGGAGGGGAGGCCTGGGCACTTTGGTGATGTTTGGATGTACTGGACTGATGATGGACTTGGCTATTTTGAGTTTCTCCAACAGCTAGCAGAGGACTTGGGTGCATTACCAATTTGGGTATTTAATAATGgTGTCAGCCATAATGATCAAGTTGATACATCCGCCATCTTACCTTTTGTGCAAGAAGCCCTTGATGGAATTGAGTTTGCAAGAGGTGATCCCACTTCAAAATGGGGTTCCCTTAGAGCTGCTATGGGCCACCCAGAGCCATTTGACCTAAGATACGTTGCTGTTGGGAATGAAGATTGTGGAGCAAAGAACTACCGAGGAAACTATGTGAAATTCTATAGTGCAATAAGAAATGCTTATCCAGATATCCAAATTATCTCAAATTGTGATGGTTCTTCTCGACCTTTAGATCATCCAGCTGATATGTATGATTATCATgTTTATACAAATGCGAATAACATGTTTTCTAGAGCAAACACATTTGATCGTACATCACGAAATGGTCCAAAGGCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGCCTTTTGGCAGCCCTAGCTGAAGCTGGGTTCCTTATTGGACTGGAAAAGAACAGTGATGTTGTTCAAATGGTCAGCTATGCTCCACTTTTTGTTAATGCCAATGACAGGAGTTGGAACCCAGATGCAATTGTATTCAACTCCTTTCAGCTCTATGGAACTCCTAGTTATTGGGTgcaactatttttctctgaGTCAAGTGGAGCAACACTTCTAAGTACATCACTTCAAGCAACTTCCTCAAATTCACTTGTTGCATCAgcaattatatttcaaaattccgtagataagaaaaaatacaTACGAATAAAGGTTGTGAACTTTGGTACCAACGCTGTGAACCTCAAAATCTCTCTCGACGGACTGGAACCAAACTCATTGCAATTGTCTGGGTCAACGAAGACTGTGATTACGTCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCGAAGAAGGTGGTGCCAACCCAGAGTCTACTTCAGAATGTTGGGAAGGACATGAATGTCACAGTCCCACCACATTCGTTCACATCATTTGATTTGCTGAAAGAATCCAGTAATCTGAAGATGACAGGGAGTGATTCTTCCACGAGATCTGCAATTGTGACTTTGTCTGCTATTGCGGCCATTATGGGTGCCACATGA 2073 0.4158 MGSSRASCSVSLLQLFIVVCLLFQCIAFKVHADLSTTLLVNASDASGRPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWSSIGNESLINVETDRTSCFDRNKVALRLEVSCESKGDTICPADGVGVYNPGFWGMSIEQGKKYKVVFYVRSTESLNLTVSLTGSDGVGNLASSVITGSALDYSNWTEVETLLVAKATNPNSRLQLTTTTKGVIWLDQVSAMPLETYKGHGFRSELVEMLADLKPKFIRFPGGCYVEGEWLRNAFRWKATVGPWEGRPGHFGDVWMYWTDDGLGYFEFLQQLAEDLGALPIWVFNNGVSHNDQVDTSAILPFVQEALDGIEFARGDPTSKWGSLRAAMGHPEPFDLRYVAVGNEDCGAKNYRGNYVKFYSAIRNAYPDIQIISNCDGSSRPLDHPADMYDYHVYTNANNMFSRANTFDRTSRNGPKAFVSEYAVTGKDAGTGSLLAALAEAGFLIGLEKNSDVVQMVSYAPLFVNANDRSWNPDAIVFNSFQLYGTPSYWVQLFFSESSGATLLSTSLQATSSNSLVASAIIFQNSVDKKKYIRIKVVNFGTNAVNLKISLDGLEPNSLQLSGSTKTVITSANVMDENSFSQPKKVVPTQSLLQNVGKDMNVTVPPHSFTSFDLLKESSNLKMTGSDSSTRSAIVTLSAIAAIMGAT 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1640 690 Gene3D - 540 658 IPR013780 -
Ssu4g1640 690 SMART alpha_l_af_c 463 651 IPR010720 GO:0046373|GO:0046556
Ssu4g1640 690 Pfam Alpha-L-arabinofuranosidase C-terminal domain 464 651 IPR010720 GO:0046373|GO:0046556
Ssu4g1640 690 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1-LIKE 1 673 - -
Ssu4g1640 690 SUPERFAMILY Galactose-binding domain-like 73 233 IPR008979 -
Ssu4g1640 690 Gene3D Glycosidases 219 539 - -
Ssu4g1640 690 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 1 673 - -
Ssu4g1640 690 SUPERFAMILY Glycosyl hydrolase domain 529 655 - -
Ssu4g1640 690 SUPERFAMILY (Trans)glycosidases 214 546 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1640 Ssu-Chr4 28550534 28560613 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1640 1 680 Glycoside Hydrolase AT3G10740 68.082 0.0 979
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1640 K01209 - gmx:100787207 1241.87