Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0800 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0801 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0802 Acco10g1105 . Accr4g01645 . . . . Aed4g2355 . . . . . . Alju08g1683 . . . . . . . Bach12g01350 . Bisa09g0191 . . . . . . Cca09g01245 Dere04g1724 . . . Enph1g0746 . Glsi08g0217 . Gma08g03082 Gma18g00694 . . Gso8g2745 Gso8g2745 . . . . . Lal3g0777 . Lal11g1039 . . . . . . Lapu6g02475 . Lasa5g01200 . Lele01g1310 Lele02g1582 . Lele04g1572 . . . . . . . . Mepo3g04843 . Mesa9g02070 . Mibi05g1570 . . . . . Phco11g01836 . Prci8g0960 . . . . . Pte9g01207 . . . Pumo1g00755 . Pvu6g0620 . Rops11g02555 . . . Spst6g01888 . . Ssu9g1106 Sto9g2053 . . . Trre5g01092 . . . Vian6g00506 . Vifa2g01088 . Vimu2g02348 . Viun6g00989 . . . . .
Vvi19g0803 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva12g02600 . . Car05g01153 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja6g1233 . . . . . . . . . . . . . . . . . Psa5g3821 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0804 . . . . . Adu07g00148 Aed3g2604 . . . . . . . . Alju07g1051 . . . Apr9g1850 . . . Bach3g00965 . . . . Car02g02153 . Cca05g02039 . . Dere05g1224 . . . Enph7g0149 . Glsi10g1889 . . . . . . . . Lal18g1622 . Lal6g0031 . . . Lan2g1365 . Lan2g1365 . . . . . . . . . . . Lele25g1457 Lele26g1489 Lele27g0623 Lele28g1484 . . . . . . . Mesa17g04557 . Mibi08g0901 . . . . . Phco3g00137 . Prci2g2411 . . . Pste8g00263 . . . . . Pumo9g01776 . Pvu8g2893 . Rops9g00190 . Seca8g00176 . Spst8g00995 Ssu6g3591 . . . . . . Trre9g05228 . . . Vian7g01094 . Vifa1g03555 . Vimu1g00284 . Viun8g02997 . Vivi7g02550 Vra6g0122 .
Vvi19g0805 . . . . . . . . Aev07g0122 . Ahy17g0208 . Aip07g00148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma02g02822 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr5g3439 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr4g0239 . . . Tsu05g04054 . . . . . . . . . . . .
Vvi19g0806 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0807 . . . . . . . . . . Ahy17g0207 . Aip07g00147 . . . . . . . . . . . . . Bva12g02599 . . . . . . . Dod08g0149 . . . . . . . . Gma14g00115 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal8g0199 . . . . . . . Mtr5g3440 . . . . . . . Psa2g0156 . . . . . . . . . . . . . . . . . . . Sto5g1822 . Tpr4g0241 . . . Tsu05g04055 . . . . . . . . . . . .
Vvi19g0808 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal8g0198 . . . . . . . Mtr5g3441 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr4g0242 . . . Tsu05g04056 . . . . . . . . . . . .
Vvi19g0809 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g0800 Chr19 8924141 8924865 +
Vvi Vvi19g0801 Chr19 8933286 8934203 +
Vvi Vvi19g0802 Chr19 8942483 8945587 +
Acco Acco10g1105 Chr10 24999396 25006390 -
Accr Accr4g01645 Chr4 17326203 17332378 +
Aed Aed4g2355 Chr4 25951307 25957133 +
Alju Alju08g1683 Chr08 13809683 13820094 +
Bach Bach12g01350 Chr12 9494631 9499849 +
Bisa Bisa09g0191 Chr09 2431127 2438215 -
Cca Cca09g01245 Chr09 34710664 34716968 -
Dere Dere04g1724 Chr04 19712471 19719843 -
Enph Enph1g0746 Chr1 33627184 33633932 -
Glsi Glsi08g0217 Chr08 1915219 1922299 -
Gma Gma08g03082 Chr08 47521897 47528579 -
Gma Gma18g00694 Chr18 7134504 7140566 +
Gso Gso8g2745 Chr8 45157056 45163868 -
Gso Gso8g2745 Chr8 45157056 45163868 -
Lal Lal3g0777 Chr3 6975278 6982584 +
Lal Lal11g1039 Chr11 14001250 14011798 -
Lapu Lapu6g02475 Chr6 24650490 24657047 +
Lasa Lasa5g01200 Chr5 329453060 329458800 -
Lele Lele01g1310 Chr01 7989768 7995406 +
Lele Lele02g1582 Chr02 19739930 19745280 +
Lele Lele04g1572 Chr04 20586445 20591932 +
Mepo Mepo3g04843 Chr3 60568460 60575879 -
Mesa Mesa9g02070 Chr9 45038301 45046423 -
Mibi Mibi05g1570 Chr05 18491209 18498025 +
Phco Phco11g01836 Chr11 14723048 14728804 +
Prci Prci8g0960 Chr8 6342628 6350029 +
Pte Pte9g01207 Chr9 33801306 33805328 -
Pumo Pumo1g00755 Chr1 11344969 11351428 +
Pvu Pvu6g0620 Chr6 17599286 17605715 -
Rops Rops11g02555 Chr11 43578124 43585671 +
Spst Spst6g01888 Chr6 18077342 18083067 +
Ssu Ssu9g1106 Chr9 42716042 42724670 -
Sto Sto9g2053 Chr9 24484268 24489369 -
Trre Trre5g01092 Chr5 7645361 7651570 +
Vian Vian6g00506 Chr6 20182456 20188166 -
Vifa Vifa2g01088 Chr2 294040647 294046837 -
Vimu Vimu2g02348 Chr2 18952719 18959060 +
Viun Viun6g00989 Chr6 19387650 19393377 -
Vvi Vvi19g0803 Chr19 8945634 8949150 +
Bva Bva12g02600 Chr12 19264065 19269950 +
Car Car05g01153 Chr05 54159617 54166386 -
Lja Lja6g1233 Chr6 36205807 36217657 +
Psa Psa5g3821 Chr5 301200887 301207326 +
Vvi Vvi19g0804 Chr19 8952168 8955081 +
Adu Adu07g00148 Chr07 1371247 1374714 +
Aed Aed3g2604 Chr3 28010176 28013817 +
Alju Alju07g1051 Chr07 32419379 32425217 +
Apr Apr9g1850 Chr9 27249668 27253193 +
Bach Bach3g00965 Chr3 20166433 20169369 +
Car Car02g02153 Chr02 51746766 51751123 +
Cca Cca05g02039 Chr05 40157729 40162476 +
Dere Dere05g1224 Chr05 19651642 19657037 -
Enph Enph7g0149 Chr7 6900730 6915981 +
Glsi Glsi10g1889 Chr10 13217180 13220754 -
Lal Lal18g1622 Chr18 17630569 17634922 +
Lal Lal6g0031 Chr6 227878 232475 -
Lan Lan2g1365 Chr2 24321990 24326368 +
Lan Lan2g1365 Chr2 24321990 24326368 +
Lele Lele25g1457 Chr25 10855572 10861376 -
Lele Lele26g1489 Chr26 10759529 10762404 -
Lele Lele27g0623 Chr27 14188172 14194959 +
Lele Lele28g1484 Chr28 11166420 11179749 -
Mesa Mesa17g04557 Chr17 76801526 76806197 +
Mibi Mibi08g0901 Chr08 21116463 21123003 +
Phco Phco3g00137 Chr3 913602 917469 -
Prci Prci2g2411 Chr2 19600756 19608437 -
Pste Pste8g00263 Chr8 1470748 1473567 -
Pumo Pumo9g01776 Chr9 46883498 46888095 -
Pvu Pvu8g2893 Chr8 58702702 58706635 +
Rops Rops9g00190 Chr9 2412961 2416478 -
Seca Seca8g00176 Chr8 2219949 2223716 -
Spst Spst8g00995 Chr8 8659752 8663725 +
Ssu Ssu6g3591 Chr6 79570482 79571270 +
Trre Trre9g05228 Chr9 57309186 57312853 +
Vian Vian7g01094 Chr7 19153184 19155887 -
Vifa Vifa1g03555 Chr1 552523056 552526439 +
Vimu Vimu1g00284 Chr1 1661327 1664673 -
Viun Viun8g02997 Chr8 37319294 37322679 +
Vivi Vivi7g02550 Chr7 89430499 89434042 -
Vra Vra6g0122 Chr6 866095 869857 -
Vvi Vvi19g0805 Chr19 8962812 8965954 +
Aev Aev07g0122 Chr07 729321 732772 -
Ahy Ahy17g0208 Chr17 2005462 2016030 -
Aip Aip07g00148 Chr07 1126083 1139547 -
Gma Gma02g02822 Chr02 53740702 53744719 +
Mtr Mtr5g3439 Chr5 43247339 43253075 +
Tpr Tpr4g0239 Chr4 2417494 2430471 +
Tsu Tsu05g04054 Chr05 51317814 51338099 +
Vvi Vvi19g0806 Chr19 8994872 8997460 +
Vvi Vvi19g0807 Chr19 9002001 9003082 +
Ahy Ahy17g0207 Chr17 1997967 2002728 -
Aip Aip07g00147 Chr07 1111355 1123123 -
Bva Bva12g02599 Chr12 19260391 19263122 -
Dod Dod08g0149 Chr08 1630672 1635237 -
Gma Gma14g00115 Chr14 962150 966893 -
Mal Mal8g0199 Chr8 3133681 3139294 -
Mtr Mtr5g3440 Chr5 43263386 43268107 +
Psa Psa2g0156 Chr2 5774049 5777856 -
Sto Sto5g1822 Chr5 13324955 13325575 -
Tpr Tpr4g0241 Chr4 2440909 2446731 +
Tsu Tsu05g04055 Chr05 51344929 51348589 +
Vvi Vvi19g0808 Chr19 9006071 9008545 +
Mal Mal8g0198 Chr8 3126873 3131605 -
Mtr Mtr5g3441 Chr5 43271725 43276873 +
Tpr Tpr4g0242 Chr4 2473628 2477343 +
Tsu Tsu05g04056 Chr05 51350154 51353989 +
Vvi Vvi19g0809 Chr19 9010621 9012519 -