Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1572 ATGGCTCCCGCCGCAACTGGGAATGACATTTCCGATTATTCTGAAATTGAAGACGAGGAGATGGTAGGACCCGGCGAGGTCGAAGGAGAAGTACTGGGAGACGATTCTGGGTCTGCTTCTGAAGATTCTCTTGACGGCGATAATCCTCTCGCTAATGATATCTTCCAAGATAGTGACGATGAAGGTACTGCAGAGGAAAGGGATGGCTCGGGTTCGGGTACGGACTCGGATTCAGATTCTGGTGGTGATATTGAGAAAAAGTCGAGAGCTATTGATGAAGAAAAGGCGCGAGAAGAAGAAGATGCAGAAGCTGAAATGAAGCTCAATATTCAAGGAGAATCTGATGAGTTTAGATTGCCGACCAAGGAGGAACTCGATGAAGAGGCTCTACGTCCACCTGATCTTTCAAATCTTCAGAGAAGAATCAAAGAGATTGTTCGTGTTCTTTCCAATTTTAAGGCGTTGAGGGAAGAAGGGTCAACAAGGAAGGATTACATTAACCGGCTTAAGAAAGATATATGTTCATATTATGGGTATAACGAGTTCCTTGTTGGGGCTTTGGTTGAGGTTGGACTTGTTGTGTACGATTCTCAAGTACCAATTGGTGCCACTCCTGAGTATATGGCTGGTTTCTATATGCTTCAAAGTGCTAGTTCTTTTCTGCCTGTGATGGCCTTGGCTCCTCAAGAGAAGGAACGGGTTGTTGATATGGCAGCTGCACCTGGTGGTAAAACAACTTATATTGCTGCCCTCATGAAGAATACTGGAATTGTTTTTGCAAATGAAATGAAGGTGCCCCGGCTTAAATCACTTACTGCAAATTTGCATCGTATGGGAGTCTCAAACACTGTAGTCTCTAACTACGACGGAAAGGAGGTTATATCAAAGGATGAGTCTGTAAAAACTTCTAAAAATCTCGAAGATATACAGAAATGTGCTCATCTACAAAAGGAATTGATTCTTGCTGCTATTGACATGGTGGATGCTAATTCAAAATCTGGCGGTTATATTGTTTATTCAACATGCTCCATCATGGTGGCAGAGAATGAAGCAGTCATTGACTATGCTCTCAAAAAGAGGGATGTTAAACTCGTGCCATGTGGTCTTGACTTTGGCCGTCCTGGGTTTATTAAGTTTAGGGAACAACGTTTTCACCCTTCATTGGAAAAGACAAGGCGTTTCTATCCTCATGTTCACAATATGGATGGGTTTTTTGTTGCAAAGTTGAAAAAACTGAGCAACTCAAAGCCAAGTGCAAAACCATTAGAACCAACAGAACAGGAGGAAGGTGCCGAGGTTGTGAATGAGAAGGAGATTACAAGTAACGGTGAGAAGCAAGATGCAGATGGCAAAAAGCAAAGTGTTAATGCCAAAAAGCAAATGGCAAATGCCAAAAAACAAACTGCAAATGCCAAAAAGCAAAATGCAAATGGTAAAATACAAACTGCAAGTGGTGTACAAGCATCTGAATCCAAGAAGAGGAAGAAAAGGCAATTTCCATCTAGAGAGGAAATTTCGAAAGCCAGGGAAGGGAAGAGGAGAGCTTTAAGAGAAAAGAAAGGAAAGAAGGCAGGAAGCAAAAAGGCTAAAAGGGGGGATTGA 1602 0.4238 MAPAATGNDISDYSEIEDEEMVGPGEVEGEVLGDDSGSASEDSLDGDNPLANDIFQDSDDEGTAEERDGSGSGTDSDSDSGGDIEKKSRAIDEEKAREEEDAEAEMKLNIQGESDEFRLPTKEELDEEALRPPDLSNLQRRIKEIVRVLSNFKALREEGSTRKDYINRLKKDICSYYGYNEFLVGALVEVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGIVFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKEVISKDESVKTSKNLEDIQKCAHLQKELILAAIDMVDANSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIKFREQRFHPSLEKTRRFYPHVHNMDGFFVAKLKKLSNSKPSAKPLEPTEQEEGAEVVNEKEITSNGEKQDADGKKQSVNAKKQMANAKKQTANAKKQNANGKIQTASGVQASESKKRKKRQFPSREEISKAREGKRRALREKKGKKAGSKKAKRGD 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1572 533 MobiDBLite consensus disorder prediction 456 488 - -
Lele04g1572 533 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 76 188 IPR023267 GO:0001510
Lele04g1572 533 MobiDBLite consensus disorder prediction 415 533 - -
Lele04g1572 533 MobiDBLite consensus disorder prediction 513 533 - -
Lele04g1572 533 Pfam 16S rRNA methyltransferase RsmB/F 290 410 IPR001678 GO:0008168
Lele04g1572 533 PRINTS RNA (C5-cytosine) methyltransferase signature 235 245 IPR023267 GO:0001510
Lele04g1572 533 PRINTS RNA (C5-cytosine) methyltransferase signature 206 220 IPR023267 GO:0001510
Lele04g1572 533 PRINTS RNA (C5-cytosine) methyltransferase signature 334 350 IPR023267 GO:0001510
Lele04g1572 533 PRINTS RNA (C5-cytosine) methyltransferase signature 394 411 IPR023267 GO:0001510
Lele04g1572 533 MobiDBLite consensus disorder prediction 489 512 - -
Lele04g1572 533 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 141 412 IPR001678 GO:0008168
Lele04g1572 533 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 160 411 IPR029063 -
Lele04g1572 533 Coils Coil 454 479 - -
Lele04g1572 533 Gene3D Vaccinia Virus protein VP39 292 512 IPR029063 -
Lele04g1572 533 MobiDBLite consensus disorder prediction 1 117 - -
Lele04g1572 533 MobiDBLite consensus disorder prediction 65 117 - -
Lele04g1572 533 Gene3D Vaccinia Virus protein VP39 121 291 IPR029063 -
Lele04g1572 533 MobiDBLite consensus disorder prediction 422 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1572 Lele-ChrLele04 20586445 20591932 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1572 04 20586445 20591932 Lele04g1572 04 20586445 20591932 ECH
Lele01g1310 01 7989768 7995406 Lele04g1572 04 20586445 20591932 hybridization
Lele02g1582 02 19739930 19745280 Lele04g1572 04 20586445 20591932 hybridization