Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00284 ATGGCTGACAACAAAAACCACTCCGAAGTAGCCATACCTGCAAACAAACAGTGCTGTGTAGCGCGTTGCACTGTGTTGGGGATCTTTCGACGGGCCGCCAGTTATGAGGATGAAGGCGAAGAGGTTGACGACTCTCCGATTGAGCAGGTGAGGCTGACGGTTCCAATAACCGACGACCCTACGCAGCCTGTGCTGACATTCAGGACATGGACTTTGGGAATAGCTTCGTGCGTTGTCCTCGCATTCATCAACCAATTCTTTGGCTACAGAACCACCCCTCTTTACGTTTCTTCTGTGTCAGCACAGATTATTTCTCTCCCACTTGGCAAATTCATGGCCAGAACACTTCCGACCAAAGCTTTTGTTTTTCCTTTTACCAAGTGGTCGTTCACTATGAACCCTGGCCCATTCACTTTAAAGGAGCATGCGCTCATCACCATCTTTGCCAGTGCTGGATCTAGTGGTGTTTATGCCATCAACATTATCACTATTGTCAAGGCTTTCTACCACAGGAGCATCCACCCAATGGCTGCTTTCCTGCTCGCGTTATCCACCCAGGTTGTTGAAAGTAACAATTTTTTGTTGAAAAAAGCTAGTGCTGTGGGTGGTGGAAAATTCCTCGTTGATTCCCCGTACATGTGGTGGCCATCAAACCTTGTCCAGGTGTCTTTATTCAGGTATTTTATTATTCTTTCAAGGGCATTCCATGAAAAGGAGAAAAGGCCTAAAGGAGGAAACACAAGGCTGCAATTCTTTATACTGGTGTTTGTGTCAAGTTTTGCTTATTACATCATTCCTGGGTATTTATTCCCAGGAATAGCAACAATCTCGTGGGTTTGCTTAGTGTGGAAAAAGTCCATCCTTGCTCAACAAATTGGTTCGGGTCTTGGTGGGCTTGGCATTGGTTCATTTGGCTTTGACTGGAACACAGTGGCTGGGTTTTTGGGGACCCCTTTGGCTACACCTGGCTTTGCCATCATCAACACACTGGTTGGATTTGTGCTCTTTATGTACGTTCTGATTCCAATTTCATATTGGAACAACGTATATGATGCCAAGAAGTTCCCCATCATCAGTTCTAACACCTTTGATTTCACTGGAAAAAAATATAATGTCACTCGGATTCTCAATGATAAAACTTTTGACATCGATATGGACAGTTATAACAATTACAGCAAGCTCTATCTTAGTATCACGTTTGCATTCGATTATGGATTGAGCTTTGCCTCTCTCACCGCCACCATTTCGCATGTTGTTCTCTTCCATGGAAAAACGATTGTTAATATGTGGAAGAGGACAACTACTGCACTAAAAGAAAAAACATTCGGAGATGTGCATACAAGAATTATGAAGAAAAACTATGAACAAGTACCTGAGTGGTGGTTTGTGAGCATTTTGGTTCTAATGGTAGTTGTGGCTCTGATAACTTGTGAAGGCTTTCACAAGCAACTTCAGTTACCATGGTGGGGAGTTCTGATGTCTCTTGGTATTGCTTTGGTTTTCACTTTGCCAGTTGGAGTAATTCAAGCAACAACAAACATGCAAGCAGGGCTTAACGTGATCACAGAGCTGATAATCGGGTTCATTTACCCCGGAAAGCCACTTGCCAATGTAGCCTTCAAGACATACGGCTACATCAGCATGTCACAGGCACTCGGATTCCTTGGTGACTTCAAACTAGGCCACTATATGAAAATCCCTCCAAAATCTATGTTCATCGTGCAGTTGGTGGGCACTGTGGTTGCTTCATCAGTGTACTTTGGAACAGCATGGTGGCTTCTGACGAGTGTTCCAGACATCTGTGATGTATCAAAACTGCCAGAAAATAGTCCATGGCAGTGCCCTGGTGACGATGTGTTTTACAATGCTTCAATCATATGGGGAGTGGTGGGTCCAAAGAGAATGTTCACCAAGGATGGAATTTACCCTGGAATGAATTGGTTTTTCCTCATCGGTGCACTTGCTCCGGTTCCGGTGTGGTTCTTTGCTCGGAAATACCCAGACAAGAGGTGGATTGAACTCATCAACATGCCCCTCATCATTATGGGTGCCGGAGCTATTCCTCCGGCGAGAACCGTCAACTACATAACCTGGGGAGCTGTCGGAATCTTCTTCAATTTTTACATTTACAACAAGTTCAAGTCGTGGTGGGCTCGCCATACTTACATTCTATCAGCTGCATTGGATGCTGGGCTTGCTTTCATGGGAGTGGTTCTCTACTTTGCCCTCCAAAGTCACGACATTTTAGGTCCAACCTGGTGGGGTGCCGAAGCTGACCACTGCCCTTTGGCCAAATGTCCTACAGCTCCAGGCATAGTTGCTCATGGATGCCCTACTCTCTGA 2343 0.452 MADNKNHSEVAIPANKQCCVARCTVLGIFRRAASYEDEGEEVDDSPIEQVRLTVPITDDPTQPVLTFRTWTLGIASCVVLAFINQFFGYRTTPLYVSSVSAQIISLPLGKFMARTLPTKAFVFPFTKWSFTMNPGPFTLKEHALITIFASAGSSGVYAINIITIVKAFYHRSIHPMAAFLLALSTQVVESNNFLLKKASAVGGGKFLVDSPYMWWPSNLVQVSLFRYFIILSRAFHEKEKRPKGGNTRLQFFILVFVSSFAYYIIPGYLFPGIATISWVCLVWKKSILAQQIGSGLGGLGIGSFGFDWNTVAGFLGTPLATPGFAIINTLVGFVLFMYVLIPISYWNNVYDAKKFPIISSNTFDFTGKKYNVTRILNDKTFDIDMDSYNNYSKLYLSITFAFDYGLSFASLTATISHVVLFHGKTIVNMWKRTTTALKEKTFGDVHTRIMKKNYEQVPEWWFVSILVLMVVVALITCEGFHKQLQLPWWGVLMSLGIALVFTLPVGVIQATTNMQAGLNVITELIIGFIYPGKPLANVAFKTYGYISMSQALGFLGDFKLGHYMKIPPKSMFIVQLVGTVVASSVYFGTAWWLLTSVPDICDVSKLPENSPWQCPGDDVFYNASIIWGVVGPKRMFTKDGIYPGMNWFFLIGALAPVPVWFFARKYPDKRWIELINMPLIIMGAGAIPPARTVNYITWGAVGIFFNFYIYNKFKSWWARHTYILSAALDAGLAFMGVVLYFALQSHDILGPTWWGAEADHCPLAKCPTAPGIVAHGCPTL 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00284 780 NCBIfam OPT family oligopeptide transporter 49 744 IPR004813 GO:0035673
Vimu1g00284 780 PANTHER ISP4 LIKE PROTEIN 37 778 IPR004648 GO:0055085
Vimu1g00284 780 NCBIfam small oligopeptide transporter, OPT family 43 747 IPR004648 GO:0055085
Vimu1g00284 780 Pfam OPT oligopeptide transporter protein 65 742 IPR004813 GO:0035673
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00284 Vimu-Chr1 1661327 1664673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00284 43 778 Organic Solute Cotransporters AT4G26590 66.079 0.0 1011
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00284 - - gmx:100776230 1257.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00284 1 1661327 1664673 Vimu1g00284 1 1661327 1664673 ECH