Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3821 ATGGCGCCAGCAACTAGGAACAAACCTTCGAAGCCACTCAAAGTTCAAAAAGCTCCAAAAAAGGTACAAATTGTTCCCGTCAAAGACGATTCCTCCTCCGAATCCGAAGAAGAAGCACCGCCACAGCAGCTTGAACTCGGCGATGACGGCGGCAATGACTCTGGTTCTGATTCTGACTTATCTTCCGACGGGGACGATCAATTAGCCGACGATTTCCTACAAGGAAGTGACGAAGACGAAGACGACGACGAAGAGAAAGCCTCGGGTTCAGATTCTGGTTCGGAGTTGGATTCTGATTCGGATGACGATGATGATGATATTGAGAAGAAGTCGAAAGCTATTGATGAAGCAAGGGAGAGAGAAAAAGAGGATGCTGAAGCTGAAATGCAGACTAATATCCAAGAAGAGTCTGACGAGTTTAGATTACCAACCAAACAGGAACTTGAGGAAGAGGCTTTGCGGCCACCTGATCTTTCCAATCTTCAAAGGAGGATTAAAGAGATTGTCCGTGTTCTATCCAATTTTAAGGCTTTGAGGCAAGATGAGTCGACGAGGAAGGAATATGTTGAACAGCTTAAGAATGATATACGCTCATACTATGGCTACAATGAGTTTCTAATCGGTGCTTTAGTAGAGATGTTTCCAGTTGTTGAACTGATGGAATTGATTGAAGCTTTTGAGAAGCCTCGTCCTATATGTTTGAGGACAAATACTTTAAAGACACGTAGACGGGATTTGGCAGATGTTTTGATAAACAGAGGAGTAAATCTGGATCCCCTGAGCAAATGGTCCAAAGTTGGACTTGTAGTGTATGATTCTCAAGTACCAATTGGTGCCACTCCAGAGTACATGGCTGGTTTTTACATGCTTCAAAGTGCTAGTTCTTTTCTGCCTGTGATGGCCTTGGCTCCTCAAGAAAAGGAACGGATTGTTGATATGGCGGCTGCTCCTGGTGGTAAAACAACTTACATTGCCGCTCTAATGAAAAACTCTGGAATAATTTTTGCCAATGAAATAAAGGTACCACGACTAAAATCTCTGACTGCAAATTTGCATCGGATGGGTGTATCAAACACTGTAGTCTGCAACTATGACGGGAAGGAGCTTCCAAAGGTTATGGGTCTCAATTCTGTTGATAGGGTATTATTGGATGCCCCTTGCAGTGGAACTGGGGTTATATCCAAAGATGAGTCAGTTAAAACATCTAAAAACTATGAAGATATTAAGAAATGTGCCCATCTACAGAAGGAGCTCATTCTTGCTGCAATTGACATGGTAGATGCTAATTCAAAATCTGGGGGATACATTGTATATTCTACGTGCTCAATCATGGTTGCCGAGAATGAAGCAGTTATCGATTATGCACTCAAAAGGAGGGATGTTAAACTTGTTCCTTGTGGACTTGACTTTGGGCGTCCGGGGTTCACCAAATTTAGGGAACTGCGTTTTCACCCTTCATTAGAGAAGACTAGACGTTTCTATCCCCATGTACACAATATGGATGGATTTTTTGTTGCCAAGTTGAAGAAAATGAGCAACTCAAAACTTGGTGCAAAACCATCCGAAACATCTGAAAAGGACGAAGAAGAAACAGAGCTCGTGAAGGATGACCAAAAACCAAGTAATGGCATAAAATGGAACGGCAAACAATCTTTGGAATCTGAAAAGGACAAAGAAGAAACCGAGCTTGTGAAGGACGACGATATACCAAGCAATGGCATAAAAGAAAACGGCTCTGAATCAAAAAAGAGGAAGAGAGAGAAATTTCTTTCAAAACCAAGTAATGTGAAAGAACCTTCTGAACCTGAATCCAAGAAATGGGTGAAAAGGAAATTTCCTTCAAGAGAGGAGATTTCAAAATCCAGAGAGGAGAAGAGACTTGCTTTAATAGAAAGCAAGAGAAAAGGTATTAAGCAGCCAGAAAACGAGAGAACAGGAGAAGACAAGAAAACAGGGGGTAAGAAACAAAGAAGAAAATTGGGCAAGGAACAAAGAAGAAAATGA 2004 0.4177 MAPATRNKPSKPLKVQKAPKKVQIVPVKDDSSSESEEEAPPQQLELGDDGGNDSGSDSDLSSDGDDQLADDFLQGSDEDEDDDEEKASGSDSGSELDSDSDDDDDDIEKKSKAIDEAREREKEDAEAEMQTNIQEESDEFRLPTKQELEEEALRPPDLSNLQRRIKEIVRVLSNFKALRQDESTRKEYVEQLKNDIRSYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEIKVPRLKSLTANLHRMGVSNTVVCNYDGKELPKVMGLNSVDRVLLDAPCSGTGVISKDESVKTSKNYEDIKKCAHLQKELILAAIDMVDANSKSGGYIVYSTCSIMVAENEAVIDYALKRRDVKLVPCGLDFGRPGFTKFRELRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKLGAKPSETSEKDEEETELVKDDQKPSNGIKWNGKQSLESEKDKEETELVKDDDIPSNGIKENGSESKKRKREKFLSKPSNVKEPSEPESKKWVKRKFPSREEISKSREEKRLALIESKRKGIKQPENERTGEDKKTGGKKQRRKLGKEQRRK* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3821 667 Gene3D Vaccinia Virus protein VP39 298 602 IPR029063 -
Psa5g3821 667 MobiDBLite consensus disorder prediction 550 654 - -
Psa5g3821 667 MobiDBLite consensus disorder prediction 515 667 - -
Psa5g3821 667 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 234 510 IPR011023 GO:0003723|GO:0006396|GO:0008757
Psa5g3821 667 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 218 295 IPR031341 -
Psa5g3821 667 ProSitePatterns NOL1/NOP2/sun family signature. 378 389 IPR018314 GO:0003723|GO:0008168
Psa5g3821 667 MobiDBLite consensus disorder prediction 105 142 - -
Psa5g3821 667 MobiDBLite consensus disorder prediction 59 88 - -
Psa5g3821 667 PANTHER BNACNNG49010D PROTEIN 8 592 - -
Psa5g3821 667 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 8 592 IPR023267 GO:0001510
Psa5g3821 667 MobiDBLite consensus disorder prediction 1 142 - -
Psa5g3821 667 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 196 510 IPR029063 -
Psa5g3821 667 PRINTS RNA (C5-cytosine) methyltransferase signature 282 296 IPR023267 GO:0001510
Psa5g3821 667 PRINTS RNA (C5-cytosine) methyltransferase signature 311 321 IPR023267 GO:0001510
Psa5g3821 667 PRINTS RNA (C5-cytosine) methyltransferase signature 379 391 IPR023267 GO:0001510
Psa5g3821 667 PRINTS RNA (C5-cytosine) methyltransferase signature 433 449 IPR023267 GO:0001510
Psa5g3821 667 PRINTS RNA (C5-cytosine) methyltransferase signature 493 510 IPR023267 GO:0001510
Psa5g3821 667 Gene3D Sun protein; domain 3 188 295 - -
Psa5g3821 667 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 222 511 IPR001678 GO:0008168
Psa5g3821 667 MobiDBLite consensus disorder prediction 520 539 - -
Psa5g3821 667 Pfam 16S rRNA methyltransferase RsmB/F 299 509 IPR001678 GO:0008168
Psa5g3821 667 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 185 205 IPR023273 GO:0008168
Psa5g3821 667 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 218 230 IPR023273 GO:0008168
Psa5g3821 667 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 241 254 IPR023273 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3821 Psa-Chr5 301200887 301207326 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3821 K14835 - gmx:100807160 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3821 5 301200887 301207326 Psa5g3821 5 301200887 301207326 ECH