Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04055 ATGGCAGGAGTTGTTGAAGGTACATCTCATGTCAATACTAAGGACCACGATGAATCCAAACTTGACATTGATGATGATGCCGACAAAGAAGTGGATGATTCTCCTATAGAGCAAGTCAGACTAACAGTCCCAATAACAGACGATCCTACGCAACCAGCACTGACATTTAGGACATGGACTATTGGTTTGGGGTGTTGCATTATCCTTTCCTTTGTGAACCAATTCTTTGGGTACAGAACAAACCCTTTATCTATCTCCTCTATTGCAGCACAAATAGTTCCACTCCCACTTGGGAAACTAATGGCTGCAACACTTCCAACCACAATATATAAAGTCCCCTTCACTCCTTGGTCTTTCACATTGAATCCTGGACCATTCAATTTGAAGGAACATGCCCTTATAACCATCTTTGCTAGTGCTGGAGCTGGTGGTGTTTATGCCATTAACATAATCACTATTGTTAAGGCTTTCTACCACAGGAGTATCAATCCAATTGCTGCTTTTTTGCTAGCACTGTCAACTCAGATGCTTGGTTATGGATGGGCTGGTATATTCAGAAAGTTCCTTGTGGACTCACCCTACATGTGGTGGCCTTCAAATCTTGTCCAGGTGTCTCTATTCAgGGCATttcatgaaaaagaaaagaggcCTAAAGGAGGAAACACAAGGTTGCAATTCTTTTTCCTGGTCTTTGTGGCTAGCTTTGCTTATTACATTATTCCAGGATACTTTTTCCAAGCAATATCAACCATCTCTGTTGTTTGCTTAATATGGAAAACCTCTGTCACTGCTCAACAGATTGGTTCAGGAATGAGGGGTCTTGGTATTGGTTCATTTACCCTCGATTGGAACACTGTTGCTGGTTTCTTAGGTAGTCCTTTGGCTTATCCTGGTTTTGCCATCATTAACACGTTGGTTGGATTTGTGTTGTATGTCTATGCTGTGATTCCCATTGCCTATTGGAACAATTTGTATGAGGCCAAAAAGTTTCCCCTCATCCATTCTCACACATTTGATTCCAGTGGTGCAATATATAATGTTTCTAGGATTCTTAATGATGCAACCTTTGACATTGATATGGATGCTTATAACAATTACAGTAAGCTCTATCTTAGTATCACATTTGCATTTGATTATGGATTGAGCTTTGCGACTCTAACTGCAACCGTCTCACATGTTTTCCTCTTCCATGGAAAAACGATTAATCAGATGTGGAGAAAGACAACAGCCACGCTAAAAGAGCAAGCCGGAGACGTGCATACAAGAATCATGAAGAAAAACTATGAACAAGTCCCCGAGTGGTGGTTCATAAGCATTTTGGTTCTTGTAACTATTTTGGCCTTGATATGTTGTGAAGGCTTTGGCAAGCAGCTCCAACTTCCATGGTGGGGAGTCTTGCTTTCTCTAACAATTGCATTGGTTTTTACTTTGCCAATTGGCGTCATTCAAGCAACGACAAATCAGCAAACTGGACTTAATGTGATCACAGAGTTGATCATTGGTTACATTTATCCTGGAAAGCCCCTTGCCAATGTAGCCTTCAAGACTTATGGATACATCAGCATGTCACAAGCACTTAGTTTCCTCCAAGATTTCAAATTAGGCCACTACATGAAAATTCCTCCAAAATCTATGTTCCTAGTACAGTTGGTAGGAACTTTGGTTGCTTCAAGTGTATACTTCAGCACAGCATGGATGCTTCTAACAACTATTCCACACATATGTGATCCATCAATGTTGCCAAAGGGTAGTCCATGGACTTGTCCTGGTGATGATGTGTTTTACAATGCTTCAATCATATGGGGAATAGTAGGACCGCAAAGGATGTTCACAAAGGACGGAATTTACCCTGGACTGAATTGGTTTTTCCTCATAGGTCTACTTGCGCCTGTTCCAGTGTGGCTGCTAGCTCGCAAATATCCGAATCACAAATGGATCGAACTCATCAACATGCCGCTTATCATTGGAGGCGCAAGTGGAATACCACCGGTTAgatcaataaattatatttcttgGGGAATCGTTGGAATCTTCTTCAATTTCTACGTTTACAAACGTTTCAAGTCATGGTGGGCTAGACACACTTACATTTTGTCGGCAGCTTTAGATTCTGGCATTGCTTTCATGGGTGTGTTGCTATATTTTTCACTTCAATCTTATGATATCAATGGTCCAGCATGGTGGGGTCTTGAAGGAGATGATCACTGTCCCTTGGCTCAATGCCCTACAGCTCCTGGTGTTGTTACCGAGGGATGTCCTGCATTCTTTTGA 2271 0.41 MAGVVEGTSHVNTKDHDESKLDIDDDADKEVDDSPIEQVRLTVPITDDPTQPALTFRTWTIGLGCCIILSFVNQFFGYRTNPLSISSIAAQIVPLPLGKLMAATLPTTIYKVPFTPWSFTLNPGPFNLKEHALITIFASAGAGGVYAINIITIVKAFYHRSINPIAAFLLALSTQMLGYGWAGIFRKFLVDSPYMWWPSNLVQVSLFRAFHEKEKRPKGGNTRLQFFFLVFVASFAYYIIPGYFFQAISTISVVCLIWKTSVTAQQIGSGMRGLGIGSFTLDWNTVAGFLGSPLAYPGFAIINTLVGFVLYVYAVIPIAYWNNLYEAKKFPLIHSHTFDSSGAIYNVSRILNDATFDIDMDAYNNYSKLYLSITFAFDYGLSFATLTATVSHVFLFHGKTINQMWRKTTATLKEQAGDVHTRIMKKNYEQVPEWWFISILVLVTILALICCEGFGKQLQLPWWGVLLSLTIALVFTLPIGVIQATTNQQTGLNVITELIIGYIYPGKPLANVAFKTYGYISMSQALSFLQDFKLGHYMKIPPKSMFLVQLVGTLVASSVYFSTAWMLLTTIPHICDPSMLPKGSPWTCPGDDVFYNASIIWGIVGPQRMFTKDGIYPGLNWFFLIGLLAPVPVWLLARKYPNHKWIELINMPLIIGGASGIPPVRSINYISWGIVGIFFNFYVYKRFKSWWARHTYILSAALDSGIAFMGVLLYFSLQSYDINGPAWWGLEGDDHCPLAQCPTAPGVVTEGCPAFF 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04055 756 Pfam OPT oligopeptide transporter protein 54 716 IPR004813 GO:0035673
Tsu05g04055 756 TIGRFAM ISP4_OPT: small oligopeptide transporter, OPT family 32 721 IPR004648 GO:0055085
Tsu05g04055 756 MobiDBLite consensus disorder prediction 1 33 - -
Tsu05g04055 756 PANTHER ISP4 LIKE PROTEIN 24 753 IPR004648 GO:0055085
Tsu05g04055 756 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 38 717 IPR004813 GO:0035673
Tsu05g04055 756 PANTHER OLIGOPEPTIDE TRANSPORTER OPT FAMILY PROTEIN 24 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04055 Tsu-Chr5 51344929 51348589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04055 9 755 Organic Solute Cotransporters AT5G55930 67.023 0.0 1051
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04055 - - gmx:100776230 1317.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04055 05 51344929 51348589 Tsu05g04055 05 51344929 51348589 ECH