Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0777 ATGGCTCCTCTGACGAAGAAGAAACCTTCGAAGCCACAACAACCCACAGCGAAGAAGAACTTCAAAAATAGTAAAGTCAAAACTCCCAAACATGATTCTACTTCCGAGTCCGAACAAGAAGAGATTTTCCAACAACAACACGAAAACGAAGTCGTAGATGACGATTCCGGTTCTGATTCGGATTTCTCTTCCGATCGGGACGATCCCTTAGTCGACGATTTCCTTCAAGGAGGTGATGATGATGAAGAGAAAGCCTCGGGTTTGGATTCTGGGTCGGGTTCAGATGTGGATTCGGATTCAGATGATGAGGATATTGAAACGAAGTCGAGAGCTATCGATGAAGAAAAGGAGAGAGAAAAAGAGGATGCAGATGCTGAAATGCAGCTCAACATCAAAGAAGAGTCTGATGAGTTTAGATTACCAACCTCTGAGGAACTTGAGGAAGAAGCTCTACGTCCACCTGATATTGCTAATCTCAAGAGGAGGATTGAAGAGATTGTTCGCATTCTTTCGAATTTTAAAACCTTGAGGCAAGAAGGGTCAGCGAGGAAGGATTACATTGAACAACTTAAGAAAGATATATCTTCATATTATGGCTACAATGAGTTTCTAATTGGTGCTTTGGTGGAGATGTTTCCGGTTGTTGAACTGATACAACTGATTGAAGCTTTTGAAAAGCCTCGGCCTATGTGTCTGAGAACTAACACTTTGAAGACTCGCAGACGGGATTTAGCAGATGTTTTGATAAATAGAGGAGTAAATCTAGACCCTTTAAGCAAATGGTCAAAAGTTGGACTTGTTGTGTATGATTCTCAAGTACCAATTGGTGCCACTCCCGAGTATATGGCTGGTTTCTACATGCTTCAAAGTGCAAGTTCGTTTCTGCCTGTGATGGCCTTGGCTCCCCAAGAGAAGGAACGAGTTGTTGATATGGCGGCTGCACCTGGTGGTAAAACAACATATATTGCTGCCCTCATGAAGAATACTGGGATAATTTTTGCAAATGAAATCAAGGTATCACGGCTTAAGTCACTGACTGCAAATTTGCATCGCATGGGTGTATCAAACACTGTAGTCTGTAACTACGACGGAAAAGAGCTTCCAAAGGTTTTAGGTCAAAATGCTGTTGATAGAGTATTGTTGGATGCCCCTTGCAGTGGAACTGGGGTTATATCTAAAGACGAGTCTGTTAAAACCTCAAAAGATTTGGAAGATATACAGAAATGTGCACTACTCCAGAAGGAACTTATTCTTGCTGCAATTGACATGGTTGATGCCAATTCAAAATCTGGGGGTTACATTGTTTATTCCACATGCTCAATCATGGTTGCTGAGAATGAAGCAATTATTGACTACGCACTCAAAAAGCGGGATGTAAAGTTGGTTCCATGCGGACTCGACTTTGGGCGTCCAGGGTTTACCAAGTTTAGGGAGTTACGCTTTCACCCCTCCTTAGAAAAGACAAGGCGTTTCTATCCCCACGTACACAATATGGATGGCTTTTTTGTTGCAAAGTTGAAAAAAATGAGCAGCTCAAAGCCAAGTTCAAAATCATCAGAACCATCCGAGAAGGAGGAAGAAGATACTGAACTTGTGGAGGAAGAAGATACTGAGCTTGTGGAGGAAGAGGAGAAGCCAAGTAATGGCCTAAAAGAAAATGACATCGAAACTTCCGAATCTAAATCAAAAAAGGAGAAGAGAAGGAACCCTCCATCTAAACTGAGCAACAACATAAAAGAAAATGGCAAAGTATCTTCTGATTCTAAATCTAAAATTGAGAAGAAAAGGAAATTTCCATCGAAACCAAGTAATGACATCAAAGAAAATGGCAAAGAATTTTCTAAACGTGAGCCCCAAAAAAAGAAAAAGAAGTCACAACATAAGGAGGAAATTTCCAAAGCCAGGGAAGAGAAGAGAAATGCTTTAAGAAAAAATAAGAGCAAAGGAGATAAGCAACAGAACTGA 1965 0.4097 MAPLTKKKPSKPQQPTAKKNFKNSKVKTPKHDSTSESEQEEIFQQQHENEVVDDDSGSDSDFSSDRDDPLVDDFLQGGDDDEEKASGLDSGSGSDVDSDSDDEDIETKSRAIDEEKEREKEDADAEMQLNIKEESDEFRLPTSEELEEEALRPPDIANLKRRIEEIVRILSNFKTLRQEGSARKDYIEQLKKDISSYYGYNEFLIGALVEMFPVVELIQLIEAFEKPRPMCLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGIIFANEIKVSRLKSLTANLHRMGVSNTVVCNYDGKELPKVLGQNAVDRVLLDAPCSGTGVISKDESVKTSKDLEDIQKCALLQKELILAAIDMVDANSKSGGYIVYSTCSIMVAENEAIIDYALKKRDVKLVPCGLDFGRPGFTKFRELRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSSSKPSSKSSEPSEKEEEDTELVEEEDTELVEEEEKPSNGLKENDIETSESKSKKEKRRNPPSKLSNNIKENGKVSSDSKSKIEKKRKFPSKPSNDIKENGKEFSKREPQKKKKKSQHKEEISKAREEKRNALRKNKSKGDKQQN 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0777 654 Coils Coil 624 644 - -
Lal3g0777 654 MobiDBLite consensus disorder prediction 623 654 - -
Lal3g0777 654 Gene3D Sun protein; domain 3 186 293 - -
Lal3g0777 654 MobiDBLite consensus disorder prediction 1 148 - -
Lal3g0777 654 MobiDBLite consensus disorder prediction 26 53 - -
Lal3g0777 654 MobiDBLite consensus disorder prediction 103 148 - -
Lal3g0777 654 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 183 203 IPR023273 GO:0008168
Lal3g0777 654 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 216 228 IPR023273 GO:0008168
Lal3g0777 654 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 239 252 IPR023273 GO:0008168
Lal3g0777 654 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 216 293 IPR031341 -
Lal3g0777 654 MobiDBLite consensus disorder prediction 511 654 - -
Lal3g0777 654 PRINTS RNA (C5-cytosine) methyltransferase signature 280 294 IPR023267 GO:0001510
Lal3g0777 654 PRINTS RNA (C5-cytosine) methyltransferase signature 309 319 IPR023267 GO:0001510
Lal3g0777 654 PRINTS RNA (C5-cytosine) methyltransferase signature 377 389 IPR023267 GO:0001510
Lal3g0777 654 PRINTS RNA (C5-cytosine) methyltransferase signature 431 447 IPR023267 GO:0001510
Lal3g0777 654 PRINTS RNA (C5-cytosine) methyltransferase signature 491 508 IPR023267 GO:0001510
Lal3g0777 654 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 10 596 IPR023267 GO:0001510
Lal3g0777 654 Gene3D Vaccinia Virus protein VP39 296 653 IPR029063 -
Lal3g0777 654 MobiDBLite consensus disorder prediction 543 573 - -
Lal3g0777 654 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 232 508 IPR011023 GO:0003723|GO:0006396|GO:0008757
Lal3g0777 654 PANTHER BNACNNG49010D PROTEIN 10 596 - -
Lal3g0777 654 ProSitePatterns NOL1/NOP2/sun family signature. 376 387 IPR018314 GO:0003723|GO:0008168
Lal3g0777 654 MobiDBLite consensus disorder prediction 525 542 - -
Lal3g0777 654 MobiDBLite consensus disorder prediction 584 616 - -
Lal3g0777 654 Pfam 16S rRNA methyltransferase RsmB/F 297 507 IPR001678 GO:0008168
Lal3g0777 654 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 220 509 IPR001678 GO:0008168
Lal3g0777 654 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 192 508 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0777 Lal-Chr3 6975278 6982584 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0777 K14835 - gmx:100789776 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0777 3 6975278 6982584 Lal3g0777 3 6975278 6982584 ECH