Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01207 ATGGCTGCCAAAGCTGCTAGTAAGAAAAAAGGTGCTAAGTCACAGAAGACTCCACTTAAGAAGAAGGAGAAGAATGACCTTTTTACTGTCAAAGGTTCTCCCAACCCAATTGATTCCTCCGAGCACTCTGACGCTGAAGACGCTGACCTACACTTATCAATGGACTATACAAGGTCGGATTCTGAGTTTGATTTTTCTGATGATGATGATAATGCCACGACAGATGATTTTCTTCAGGGCAGTGGTGATGACGGAGAGGAGGACGAAGATGAAGGTGAAGGTGAAGAGGAAGGTTCAGATTCTGATATGGACTCAGATTCTGAGGAAGGTGATCCTGAGAAGCAAGCTAGAGCTATAGATAAAGAAAGGAAAAGACAGGAACAGGAAGCCGAAGATGAATTGAAGACTAATATTAAAGATGAATCTGATGAGTTCAGATTGCCAACAAAAGAGGAGCTTGAAGAAGAGGCTCTTCGTCCTCCTGATCTTCAAAATCTTGAAAGAAGAATCAAAGAGATTGTTCGGGTGCTCTCGAATTTCAAGACTTTGAAACAGGAGGGGTCGGCAAGAAAGGATTACATCGAGCAGCTTAAGAAGGATATAGGTTCATACTATGGTTACAATGAGTTTCTAATTGGTGCTTTGGTAGAGATGTTTCCAGTTGTTGAGCTTATGGAACTAATCGAGGCTTTTGAAAAGCCGCGACCTATATGTTTGAGAACCAACACACTGAAGACACGCAGGAGAGACCTGGCTGATATTTTGATAAATAGAGGCGTAAACTTGGACCCATTGAGTAAATGGTCAAAAGTTGGACTGGTGGTCTATGATTCGCAAGTACCAATCGGTGCAACCCCTGAGTATATGGCTGGTTTTTACATGCTTCAAAGTGCCAGCTCCTTTTTGCCTGTGATGGCCCTTGCACCACAAGAGAAGGAGCGAGTCGTTGATATGGCGGCCGCACCAGGTGGGAAAACAACATATATTGCTGCACTTATGAAGAACAGCGGCATAATTTTTGCAAATGAAATGAAGGCACCGCGTCTGAAGTCTTTGACTGCAAATATGCATCGAATGGGGGTTACAAATACTGTAGTATGCAACTATGATGGAAGAGAGCTTCCGAAGGTTTTGGGTCCAAACTCGGTAGATAGGGTACTACTGGATGCTCCTTGCAGTGGAACAGGGGTTATATCCAAAGATGAAACAGTGAAAACTTCAAAAAGCTTAGATGATATACAAAAGTGTGCGCACCTGCAGAAGGAATTAATTCTGGCAGCAATTGACATGGTTGATGCTAATTCAAAATCTGGGGGTTACATTGTTTACTCAACATGTTCAATAATGGTTGCTGAGGATGAAGCAGTTATTGATTATGCACTGAGAAAGAGAGATGTTAAACTTGTGCCATGTGGCCTTGACTTTGGGCGCCCAGGGTAA 1440 0.4292 MAAKAASKKKGAKSQKTPLKKKEKNDLFTVKGSPNPIDSSEHSDAEDADLHLSMDYTRSDSEFDFSDDDDNATTDDFLQGSGDDGEEDEDEGEGEEEGSDSDMDSDSEEGDPEKQARAIDKERKRQEQEAEDELKTNIKDESDEFRLPTKEELEEEALRPPDLQNLERRIKEIVRVLSNFKTLKQEGSARKDYIEQLKKDIGSYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADILINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNSGIIFANEMKAPRLKSLTANMHRMGVTNTVVCNYDGRELPKVLGPNSVDRVLLDAPCSGTGVISKDETVKTSKSLDDIQKCAHLQKELILAAIDMVDANSKSGGYIVYSTCSIMVAEDEAVIDYALRKRDVKLVPCGLDFGRPG* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01207 479 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 223 235 IPR023273 GO:0008168
Pte9g01207 479 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 246 259 IPR023273 GO:0008168
Pte9g01207 479 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 190 210 IPR023273 GO:0008168
Pte9g01207 479 FunFam Ribosomal RNA methyltransferase Nop2 194 300 - -
Pte9g01207 479 MobiDBLite consensus disorder prediction 110 158 - -
Pte9g01207 479 ProSitePatterns NOL1/NOP2/sun family signature. 383 394 IPR018314 GO:0003723|GO:0008168
Pte9g01207 479 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 104 479 IPR023267 GO:0001510
Pte9g01207 479 NCBIfam NOL1/NOP2/sun family putative RNA methylase 239 465 IPR011023 GO:0003723|GO:0006396|GO:0008757
Pte9g01207 479 Coils Coil 163 183 - -
Pte9g01207 479 Coils Coil 116 144 - -
Pte9g01207 479 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 227 479 IPR001678 GO:0008168
Pte9g01207 479 Pfam 16S rRNA methyltransferase RsmB/F 304 471 IPR001678 GO:0008168
Pte9g01207 479 PRINTS RNA (C5-cytosine) methyltransferase signature 316 326 IPR023267 GO:0001510
Pte9g01207 479 PRINTS RNA (C5-cytosine) methyltransferase signature 384 396 IPR023267 GO:0001510
Pte9g01207 479 PRINTS RNA (C5-cytosine) methyltransferase signature 287 301 IPR023267 GO:0001510
Pte9g01207 479 PRINTS RNA (C5-cytosine) methyltransferase signature 438 454 IPR023267 GO:0001510
Pte9g01207 479 Gene3D Vaccinia Virus protein VP39 299 479 IPR029063 -
Pte9g01207 479 MobiDBLite consensus disorder prediction 62 109 - -
Pte9g01207 479 MobiDBLite consensus disorder prediction 40 61 - -
Pte9g01207 479 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 223 300 IPR031341 -
Pte9g01207 479 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 201 476 IPR029063 -
Pte9g01207 479 Gene3D Sun protein; domain 3 193 298 - -
Pte9g01207 479 MobiDBLite consensus disorder prediction 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01207 Pte-Chr9 33801306 33805328 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01207 K14835 - qsa:O6P43_013526 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g01207 9 33801306 33805328 Pte9g01207 9 33801306 33805328 RCT