Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1582 ATGGTAGGACCCTGCGAGGTCGAAGGAGAAGTACTGGGAGACGATTCTGGGTCTGCTTCTGAAGATTCTCTTGACGGCGATAATCCTCTCGCTAATGATATCTTCCAAGATAGTGACGATGAAGGTACTGCAGAGGAAAGGGATGGCTCGGGTTCGGGTACGGACTCGGATTCAGACTCTGATGGTGATATTGAGAAAAAGTCGAGAGCTATTGATGAAGAAAAGGCGCGAGAAGAAGAAGATGCAGAAGCTGAAATGAAGCTCAATATTCAAGGAGAATCTGATGAGTTTAGATTGCCGACCAAAGAGGCACCATTTTTACTTTGTCTTCTTTGTCATCATTCTACTAATCATTTGAATGTTTACACTGTTCTAGCTGTTCGTGTTCTTTCCAATTTTAAGGCTTTGAGGGAAGAAGGGTCAACAAGGAAGGATTACATTAACCAGTTTAAGAAAGATATATGTTCATATTATGGGTATAACGAGTTTCTTGTTGGGGCTTTGGTTGAGTTGTTTCCAGTTGTTGAACTGATGGAATTGATTGAAGCCTTTGAAAAGCCCCGCCCCATATGTCTAAGGACTAACACTTTGAAGGTTGGACTTGTTGTGTATGATTCTCAAGTACCAATTGGTGCCACTCCTGAGTATATGGCTGGTTTCTATATGCTTCAAAGTGCTAGTTCTTTTCTGCCTGTGATGGCCTTGGCTCCTCAAGAGAAGGAACGGGTTGTTGATATGGCAGCTGCACCTGGTGGTAAAACAACTTATATTGCTGCCCTCATGAAGAATACTGGAATTGTTTTTGCAAATGAAATGAAGGTGCCCCGGCTTAAATCACTCACTGCAAATTTGCATCGTATGGGAGTCTCAAACACTGTAGTCTGTAACTACGACGGAAAGGAGCTCCCCAAGGTCTTGGGTCTCAATTCTCTTGATAGGGTGTTATTGGACGCCCCTTGCAGTGGTACTGGGGTTATATCAAAGGATGAGTCTGTAAAAACTTCTAAAAATCTCGAAGATATACAGAAATGTGCTCATCTACAAAAGCAATTGATTCTTGCTGCTATTGACATGGTGGATGCTAATTCAAAATCTGGGGGTTATATTGTTTATTCAACGTGCTCCATCATGGTGGCAGAGAATGAAGCAGTCATTGACTATGCTCTCAAAAAGAGGGATGTTAAACTCGTGCCATGTGGTCTTGACTTTGGGCGTCCTGGGTTTATAAAGTTTAGGGAGCAACGTTTTCACCCTTCCTTGGAAAAGACAAGGCGTTTCTATCCTCATGTTCACAATATGGATGGGTTTTTTGTTGCAAAGTTGAAAAAAATGAGCAACTCAAAGCCAAGTGCAAAACCATTAGAACCAACAGAACAGGAGGAAGGTGGCGAGGTTGTGAATGAAAAGGAGATTGCAAGTAACGGTGAGAAGCAAGATGCAGATGGCAAAAAGCAAAGTGCGAATGCCAAAAAGCAAATGGCAAATGCCAAAAAACAAACTGTAAATGCCAAAAAGCAAAATGCAAATGGTAAAATACAAACTGCAAGTGGTGAACAAGCATCTGAATCCAAGAAGAGGAAGAAAAGGCAATTTCCATCTAGAGAGGAAATTTCGAAAGCGAGGGAAGGGAAGAGGAGAGCTTTAAGAGAAAAGAAAGGAAAGAAGGCAGGAAGCAAAAAGTCTAAAAGGGGGGATTGA 1698 0.4199 MVGPCEVEGEVLGDDSGSASEDSLDGDNPLANDIFQDSDDEGTAEERDGSGSGTDSDSDSDGDIEKKSRAIDEEKAREEEDAEAEMKLNIQGESDEFRLPTKEAPFLLCLLCHHSTNHLNVYTVLAVRVLSNFKALREEGSTRKDYINQFKKDICSYYGYNEFLVGALVELFPVVELMELIEAFEKPRPICLRTNTLKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGIVFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKELPKVLGLNSLDRVLLDAPCSGTGVISKDESVKTSKNLEDIQKCAHLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIKFREQRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKPSAKPLEPTEQEEGGEVVNEKEIASNGEKQDADGKKQSANAKKQMANAKKQTVNAKKQNANGKIQTASGEQASESKKRKKRQFPSREEISKAREGKRRALREKKGKKAGSKKSKRGD 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1582 565 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 133 444 IPR001678 GO:0008168
Lele02g1582 565 MobiDBLite consensus disorder prediction 447 565 - -
Lele02g1582 565 Gene3D Sun protein; domain 3 146 198 - -
Lele02g1582 565 MobiDBLite consensus disorder prediction 545 565 - -
Lele02g1582 565 Pfam 16S rRNA methyltransferase RsmB/F 232 442 IPR001678 GO:0008168
Lele02g1582 565 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 143 163 IPR023273 GO:0008168
Lele02g1582 565 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 176 188 IPR023273 GO:0008168
Lele02g1582 565 PRINTS RNA (C5-cytosine) methyltransferase signature 244 254 IPR023267 GO:0001510
Lele02g1582 565 PRINTS RNA (C5-cytosine) methyltransferase signature 426 443 IPR023267 GO:0001510
Lele02g1582 565 PRINTS RNA (C5-cytosine) methyltransferase signature 215 229 IPR023267 GO:0001510
Lele02g1582 565 PRINTS RNA (C5-cytosine) methyltransferase signature 312 324 IPR023267 GO:0001510
Lele02g1582 565 PRINTS RNA (C5-cytosine) methyltransferase signature 366 382 IPR023267 GO:0001510
Lele02g1582 565 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 57 447 IPR023267 GO:0001510
Lele02g1582 565 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 199 443 IPR011023 GO:0003723|GO:0006396|GO:0008757
Lele02g1582 565 Gene3D Sun protein; domain 3 199 224 - -
Lele02g1582 565 MobiDBLite consensus disorder prediction 1 85 - -
Lele02g1582 565 MobiDBLite consensus disorder prediction 520 544 - -
Lele02g1582 565 Gene3D Vaccinia Virus protein VP39 231 553 IPR029063 -
Lele02g1582 565 Coils Coil 486 506 - -
Lele02g1582 565 MobiDBLite consensus disorder prediction 488 519 - -
Lele02g1582 565 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 152 443 IPR029063 -
Lele02g1582 565 MobiDBLite consensus disorder prediction 45 85 - -
Lele02g1582 565 MobiDBLite consensus disorder prediction 454 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1582 Lele-ChrLele02 19739930 19745280 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g1582 02 19739930 19745280 Lele02g1582 02 19739930 19745280 ECH
Lele02g1582 02 19739930 19745280 Lele04g1572 04 20586445 20591932 hybridization