Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1484 ATGGCCGGAGTCGCCGTGAATGGCACCGATCAGCCAAACTCAGACAAACCATCCAAGATTGTCATTCTAGTTTTTGTTATTGATGAAGATGATGGTGTCGTCGTCGTCGGCGGCGGCGCCAAAGAAGAAGAAGAGATAAACGACAATCCGATCGAACAAGTGAAGCTGACGGTACCAATCACGGACGACCCAGACCAACCGGCGTTGACGTTTCGAACATGGGTACTAGGTTCAGTGTCGTGCATAATTCTTGCGTTCGTGAACCAGTTCTTCAGTTATAGGACGAACCAGCTATCGATTTCGTCTGTGTCGGCTCAGATTGTGAGCTTACCTCTGGGGAAGCTCATGGAGGCGACACTGCCTAGAAAACAGATAAGGGTTCCACTCACGAGGTGGTCCTTTTCTCTGAATCCAGGACCTTTTACTCTGAAAGAACACGTGCTTATCACCATCTTTGCGAGCTCAGGTTCAAGTGGGGTTTACGCCATTAACATTATTACCATTGTTAAAGCTTTTTATCATCGGAGAATTCATCCCTTGGCTGCTTATTTGCTTGCGATAACTACCCAGAAGAGGAAAACAAAATGTGGTTGTGTGAAAAACGCTGAAGCAAAGGACAAGGCATGTCATGTGCGTCTTAAAGGAAGTGCCGCATTTGCTTTAGTGTTACCACAAGTTGCATCATACTTTGTCACTAGAGTACCTCATCATGAGCTTGTAGAAGTTTCAGAAGCACTTGAAGCTAGTGGGGTTCCATTTCTATGGTCTTTAAGGGATGATCAAAAGAGTGTTTTGCCAAATGGGGTTTTTGAGAGGACAAGTAAAAGAGGGAAAATAGTGCCATGGGCGCCAGCGATGATTGGATATGGATGGGCTGGAGTATTTAGGAAGGTCCTTGTTGACTCTCCATATATGTGGTGGCCAGCAAATCTTGTTCAGGTTTCTCTATTCAGGGCATTCCACGAGAAAGAAAGGAGGCCAAAGGGAGGAACCACAAGACTTCAATTCTTCTTGCTGGTCTTTGCAACAAGCTTTGCGTATTACATAATCCCTGGCTATCTCTTCCAATCAATCTCAGCCATATCCTTCATTTGTTTGATCTGGAAGAACTCCATCACCGCCCAGCAGATCGGCTCTGGCATGTCTGGCCTCGGCGTCGGCTCCTTTGGCCTCGACTGGAACACGGTGGCCGGTTTCTTAGGCAGCCCATTGGCCAACCCGGGCTTCGTCATCGTCAATATCCTCGTCGGCTTTTGCTCGCTCCTCTATGTCGTCATCCCCATTGCTTATTGGTCCAATGCTTTCGAAGCGAAGAAGTTTCCCCTCCTTAGCTCCCACACATTTGACTCCACTGGTGCAAAGTACAATGTCACTAGGGTTTTGAATCAAGCTAACTTCGACATTGATATGGAGCAATATAACAGTTACAGCAAGCTCTATTTGAGTGTCTTGTTTGCCTTTAACTATGGCCTCAGCTACGCAACTCTCACTGCTACTATCTCACATGTTTGCCTCTTTCATGGAAAAACTATGTATGAGATGTGGAAGAAGACGACAGATCAGCTAAAAGATGACTTCGCAGATGTGCACACGAGGATCATGAAGAAGAACTACGAACAAGTTCCTGATTGCTGGTTTATTTCTATTTTGGCGATAATGGGTGGTCTTGCTTTATTTGCTTGTCAAGGTTTTGGAGGTCAGCTTCAACTTCCATGGTGGGGAGTCTTATTCTCTTTCGCCATTGCATTTGTCTTCACTTTGCCTATTGGGGTCGTCCAAGCCACAACCAACATGCAAGTAGGGCTTAATGTAATAACAGAGTTAATTATTGGGTTCATTTACCCAGGAGAGCCTCTTGCTAATGTGGCTTTCAAGACCTACGGCTACATTAGCATGTCTCAAGCACTTGGCTTCGTTTCTGATTTCAAATTAGGGCACTACATGAAAATTCCTCCTAAATCTATGTTCATTGTCCAGTTGGCTGGAACCATAGTTGCTTCTTTAGTGTACTTTGGAACAGCATGGTGGCTTCTAACAACTGTAGAAAACATCTGTGACCCAAATCTATTATCAGAAGGAAGTCCATGGACATGCCCAAGAGACGATGTGTTCTACAACGCATCAATCATTTGGGGAGTGATAGGCCCCAAAAGAATGTTCACAAAAGAAGGAAACTACCCACAAATGAACTGGTTCTTCCTCATCGGTCTCGTCGCTCCGGTCCCGGTTTGGATTCTCTCACACAAGTTCCCGAACCAGAAATGGATTCCTCTCATAAACATGCCCATCATTTTAAGTGGAGCTGGAGGGTTACTTCCTGCAAAAGCCGTGAATTATATTATGTGGGCAATTGTTGGAATTTTCTTCAACTTCTATGTTTATAGGAAGTTTAAGGGTTGGTGGGCGAGACATACTTATATTCTTTCTGCTGCTCTTGATGCTGGGGTTGCTTTTACCGGTGTTCTTTTGTTTTTTACCCTACAAAGTTATGATATTTTGGGGCTTTCTTGGTGGGGTCTTGAAGCTGATGATCATTGTAATTTGGCTAGGTGCCCTACAGCACCAGGTGTTAAGGCTCCTGGATGCCCTACTTTCTAA 2598 0.45 MAGVAVNGTDQPNSDKPSKIVILVFVIDEDDGVVVVGGGAKEEEEINDNPIEQVKLTVPITDDPDQPALTFRTWVLGSVSCIILAFVNQFFSYRTNQLSISSVSAQIVSLPLGKLMEATLPRKQIRVPLTRWSFSLNPGPFTLKEHVLITIFASSGSSGVYAINIITIVKAFYHRRIHPLAAYLLAITTQKRKTKCGCVKNAEAKDKACHVRLKGSAAFALVLPQVASYFVTRVPHHELVEVSEALEASGVPFLWSLRDDQKSVLPNGVFERTSKRGKIVPWAPAMIGYGWAGVFRKVLVDSPYMWWPANLVQVSLFRAFHEKERRPKGGTTRLQFFLLVFATSFAYYIIPGYLFQSISAISFICLIWKNSITAQQIGSGMSGLGVGSFGLDWNTVAGFLGSPLANPGFVIVNILVGFCSLLYVVIPIAYWSNAFEAKKFPLLSSHTFDSTGAKYNVTRVLNQANFDIDMEQYNSYSKLYLSVLFAFNYGLSYATLTATISHVCLFHGKTMYEMWKKTTDQLKDDFADVHTRIMKKNYEQVPDCWFISILAIMGGLALFACQGFGGQLQLPWWGVLFSFAIAFVFTLPIGVVQATTNMQVGLNVITELIIGFIYPGEPLANVAFKTYGYISMSQALGFVSDFKLGHYMKIPPKSMFIVQLAGTIVASLVYFGTAWWLLTTVENICDPNLLSEGSPWTCPRDDVFYNASIIWGVIGPKRMFTKEGNYPQMNWFFLIGLVAPVPVWILSHKFPNQKWIPLINMPIILSGAGGLLPAKAVNYIMWAIVGIFFNFYVYRKFKGWWARHTYILSAALDAGVAFTGVLLFFTLQSYDILGLSWWGLEADDHCNLARCPTAPGVKAPGCPTF 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1484 865 Pfam OPT oligopeptide transporter protein 282 826 IPR004813 GO:0035673
Lele28g1484 865 Pfam OPT oligopeptide transporter protein 69 189 IPR004813 GO:0035673
Lele28g1484 865 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 281 828 IPR004813 GO:0035673
Lele28g1484 865 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 53 190 IPR004813 GO:0035673
Lele28g1484 865 PANTHER ISP4 LIKE PROTEIN 285 863 IPR004648 GO:0055085
Lele28g1484 865 Gene3D Glycogen Phosphorylase B; 231 284 - -
Lele28g1484 865 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 233 284 - -
Lele28g1484 865 TIGRFAM ISP4_OPT: small oligopeptide transporter, OPT family 281 829 IPR004648 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1484 Lele-ChrLele28 11166420 11179749 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1484 286 865 Organic Solute Cotransporters AT5G55930 67.931 0.0 826
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1457 25 10855572 10861376 Lele28g1484 28 11166420 11179749 hybridization
Lele26g1489 26 10759529 10762404 Lele28g1484 28 11166420 11179749 hybridization