Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1724 ATGGCTCCTGCAGCTCTAAACAAGAAGAAAGCAATGAAGTCGCAGAAAGCTCCGCCAAAGAAGAAGCAAAAGAATGAGCTTTTGACTCCGAAGGAGGCAAATGTTAAGGAGATTTCCGATCATTCTGACGTCGAAGATGACGAGATGGTAAGACATGAAGAGTCTGGAGAAGAAGAAGAAGCTGGAGACGATTCTGGTTCTGCTTCTGAAGATTCTTCTGACGGGGATAATCCCTTCACTGATGATTTCCTACAAGGAAGTGATGATGAAGAGAAAGGCTCAGCCTCGGATTCAGGTTCGGATTCGGATTCAGATTCTGATGATATTGAAAAAAAGTCAAGAGCTATTGATGAAGAAAGGGCCCGAGAAGAAGAAGATGCAGAAGCTGAAATGCAGCTCAATATTCAAGGAGAATCTGATGAGTTTAGACTGCCGACGAAGGAGGAACTTGAGGAAGAGGCTCTACGTCCACCTGAACTTGCGAATCTTCAAAGAAGAATCAAGGAGATTGTTCGTGTTCTTTCCAATTTTAAGGCTTTGAGACAAGAAGGGTCAACAAGGAAGGATTACGTTGAGCAGCTTAAGAAAGATATATGTTCATACTATGGTTACAATGAGTTTCTTATCGGGGCTTTAGTGGAGTTGTTTCCAGTTGTTGAACTGATGGAACTGATTGAAGCCTTTGAAAAGCCACGGCCTATATGTCTGAGGACTAATACTTTGAAGACACGCAGACGAGATTTGGCAGATGTTTTGATAAACAGAGGAGTAAATCTGGATCCTTTAAGTAAATGGTCAAAAGTAGGACTTGTTGTGTATGATTCGCAAGTACCAATTGGTGCCACTCCGGAGTATATGGCTGGTTTTTATATGCTCCAAAGTGCGAGTTCTTTTCTGCCTGTGATGGCCTTGGCTCCTCAAGAGAAGGAACGAGTCGTTGATATGGCGGCTGCGCCTGGTGGTAAAACAACTTATATTGCTGCTCTTATGAAGAATACTGGTATAATTTTTGCAAATGAAATGAAGGTTCCACGGCTTAAATCACTTACTGCAAATTTGCATCGTATGGGGGTGTCCAACACTGTAGTCTGTAACTATGATGGGAATGAGCTCCCAAAGGTCTTGGGTCTCAATGCTGTTGATAGAGTATTATTGGATGCCCCTTGCAGTGGTACTGGGGTTATATCAAAAGATGAGTCTGTTAAAACCTCTAAAAACATGGAAGATATACAGAAATGTGCCAATCTGCAGAAGCAATTGATTCTTGCTGCAATTGACATGGTGGATGCTAATTCAAAATCTGGGGGTTACATTGTTTATTCCACATGCTCCATCATGGTTGCCGAGAATGAAGCAGTTATTGACTATGCTCTCAAAAAGAGGGACGTTAAACTGGTGCCATGTGGACTTGACTTTGGGCGTCCTGGGTTTATAAGGTTTAGGGAGCAACGTTTCCACCCTTCATTGGAAAAGACAAGGCGATTCTATCCTCATGTTCATAACATGGATGGATTTTTTGTTGCAAAGTTGAAAAAAATGAGCAACTCAAAGCCAAGTGCAAAACCATTAGAATCAGCAGAACATGAAGAAGGCACCAAGCTTGCGAAGGAAAAGGAGAATACAAGTAATGGCCAAAAACAAGATGCAAATGGCAAAAAGAAAACTGCAAATGGCAAAGAGGCTTCTGCACTTGAATCCAAAAAGAGGAAGAAAAGACAATTTCCATCAAAGGATGAAATTTCAAAAGCCAGGGAAGAGAAGAGAAGAGCTTTAAGAGAAAAGAAAAAGACAGCAGGAAGCAAGAAGACTAAAAATGGGGATTGA 1824 0.4161 MAPAALNKKKAMKSQKAPPKKKQKNELLTPKEANVKEISDHSDVEDDEMVRHEESGEEEEAGDDSGSASEDSSDGDNPFTDDFLQGSDDEEKGSASDSGSDSDSDSDDIEKKSRAIDEERAREEEDAEAEMQLNIQGESDEFRLPTKEELEEEALRPPELANLQRRIKEIVRVLSNFKALRQEGSTRKDYVEQLKKDICSYYGYNEFLIGALVELFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGIIFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGNELPKVLGLNAVDRVLLDAPCSGTGVISKDESVKTSKNMEDIQKCANLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREQRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKPSAKPLESAEHEEGTKLAKEKENTSNGQKQDANGKKKTANGKEASALESKKRKKRQFPSKDEISKAREEKRRALREKKKTAGSKKTKNGD 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1724 607 MobiDBLite consensus disorder prediction 552 593 - -
Dere04g1724 607 MobiDBLite consensus disorder prediction 19 49 - -
Dere04g1724 607 MobiDBLite consensus disorder prediction 1 143 - -
Dere04g1724 607 Pfam 16S rRNA methyltransferase RsmB/F 301 511 IPR001678 GO:0008168
Dere04g1724 607 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 187 207 IPR023273 GO:0008168
Dere04g1724 607 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 243 256 IPR023273 GO:0008168
Dere04g1724 607 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 220 232 IPR023273 GO:0008168
Dere04g1724 607 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 220 297 IPR031341 -
Dere04g1724 607 ProSitePatterns NOL1/NOP2/sun family signature. 380 391 IPR018314 GO:0003723|GO:0008168
Dere04g1724 607 MobiDBLite consensus disorder prediction 516 607 - -
Dere04g1724 607 NCBIfam NOL1/NOP2/sun family putative RNA methylase 236 512 IPR011023 GO:0003723|GO:0006396|GO:0008757
Dere04g1724 607 Coils Coil 577 597 - -
Dere04g1724 607 PRINTS RNA (C5-cytosine) methyltransferase signature 381 393 IPR023267 GO:0001510
Dere04g1724 607 PRINTS RNA (C5-cytosine) methyltransferase signature 284 298 IPR023267 GO:0001510
Dere04g1724 607 PRINTS RNA (C5-cytosine) methyltransferase signature 313 323 IPR023267 GO:0001510
Dere04g1724 607 PRINTS RNA (C5-cytosine) methyltransferase signature 495 512 IPR023267 GO:0001510
Dere04g1724 607 PRINTS RNA (C5-cytosine) methyltransferase signature 435 451 IPR023267 GO:0001510
Dere04g1724 607 Coils Coil 160 180 - -
Dere04g1724 607 Gene3D Vaccinia Virus protein VP39 300 604 IPR029063 -
Dere04g1724 607 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 224 513 IPR001678 GO:0008168
Dere04g1724 607 MobiDBLite consensus disorder prediction 522 543 - -
Dere04g1724 607 MobiDBLite consensus disorder prediction 105 129 - -
Dere04g1724 607 Gene3D Sun protein; domain 3 190 297 - -
Dere04g1724 607 FunFam Ribosomal RNA methyltransferase Nop2 191 297 - -
Dere04g1724 607 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 103 516 IPR023267 GO:0001510
Dere04g1724 607 MobiDBLite consensus disorder prediction 50 70 - -
Dere04g1724 607 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 196 512 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1724 Dere-ChrDere04 19712471 19719843 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1724 04 19712471 19719843 Dere04g1724 04 19712471 19719843 ECH