Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01836 ATGGCTCCCGCGAGGAAGAAACCTTCGAAGCCAAGCAAATCCCCGAAGAACCCTAAGAAGACCCAACCCAAGCACGATTCCAGCTTCGAATCCGAAGAAGACACGCCGTCGCAGCAGCAACCGCAGCAACTCGAACTCGGCGATGACTACTCCGATTCCGCGTCGGAGCTCTCTTCCGAAGGGGACGACCCGTTAGCCGACGATTTCCTCCAAGGAAGCGATGACGACGAAGGGAAAGCCCCCGGTTCGGACAAAGGTTCTGGTTCTGATTCTGATTCGGATGATTATGATATCGAAGAGAAGTCGAGAGCTATTGATGAAGAGAAGGCGAGAGAGGAAGAGGACGCGGAAGCCGAAATGCAGCTCAATATCAACCAGGAGTCTGATGAGTTCAGATTACCGACCCCAGAGGAACTCGAGCAGGAGGCTTTGCATCCACCTGATCTTTCCAATCTCCAAAGGAGGATTAAAGAGATTGTTCGTGTTCTTTCAAATTTGAAGGTTTTGAGGCAAGATGGGGCAACGAGGAAAGATTATGTTGACCTGCTTAAGAAAGATATTTGCTCGTACTATGGCTACAATGAGTTTCTAATGGGTGCTCTAGTGGAGATGTTTCCAGTTGTTGAACTTATGGAACTGATTGAAGCCTTTGAAAAGCCACGCCCTATATGTCTAAGGACTAACACATTGAAGACACGCAGAAGGGATTTGGCTGATGTTTTGATAAATAGGGGAGTTAATTTGGATCCTTTAAGCAAATGGTCAAAGGTTGGACTTGTTGTGTATGATTCTCAAGTGCCTATTGGTGCCACACCTGAGTATATGGCTGGTTTCTACATGCTACAAAGTGCGAGCTCTTTTCTGCCTGTCATGGCCTTGGCTCCTCAGGAGAAGGAACGAGTTGTTGATATGGCAGCTGCACCAGGTGGTAAAACAACTTACATCGCTGCTCTAATGAAGAACTCTGGTATAATTTTTGCAAATGAAATGAAAGTACCAAGGCTTAAGTCATTGACTGCAAATTTGCATCGTATGGGTGTATCCAACACTGTAGTCTGTAACTATGATGGAAAGGAGCTTCCAAAAGTTTTAGGTGTCAATGCAGTTGATAGAGTATTATTGGATGCCCCTTGCAGTGGAACTGGGGTTATATCCAAAGATGAGTCTGTTAAATCCTCTAAAAGTTTGGAAGATATACAGAAGTGTGCGCAGCTACAGAAGGAGCTTATTCTTGCGGCAATTGACATGGTGGATGCTAGTTCAAAATCTGGGGGATACATTGTTTATTCTACATGCTCAATCATGGTTGCCGAGAATGAAGCTGTTATTGACTATGCGCTCAAAAAGCGGGATGTTAAACTGGTTCCGTGTGGACTTGATTTTGGGCGTCCAGGGTTTATAAGGTTTAGGGAACAACGTTTTCACCCTTCTTTGGAAAAGACAAGGCGTTTCTATCCTCACGTACAAAATATGGATGGTTTTTTTGTTGCAAAGTTGAAAAAAATGAGTAACACAAAGCCAGGTACAAAATCATCAGAAATAGCCGAGATGGAAGAAGGTATCGTTACCACGTTGGAGAACGAGAAGGAAAAATCAAATGATGGGAAAAAAGAAAATGGCAATGCAACTCTTGAATCTGAGTCCAAGAAGACGAAGAAAAGAAAGTTCCCCTCTAAACCAGTTAACGGTCTAAAAGAAAATGGCAAAGAATCTTCTGAATCTGAGCCCAAAAAGAGGACGAAGAGACAACTTCCATCGAAGGAAGAGATTTCAAAAGCCAGGGAGGAGAAGAGAAATGCTTTACGAGAAGAAAAGAGAAAAGGTGTTAAACCACAGAAGCACAAAATGACCAAAGCCAATGGCAATAGATGA 1872 0.4386 MAPARKKPSKPSKSPKNPKKTQPKHDSSFESEEDTPSQQQPQQLELGDDYSDSASELSSEGDDPLADDFLQGSDDDEGKAPGSDKGSGSDSDSDDYDIEEKSRAIDEEKAREEEDAEAEMQLNINQESDEFRLPTPEELEQEALHPPDLSNLQRRIKEIVRVLSNLKVLRQDGATRKDYVDLLKKDICSYYGYNEFLMGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKELPKVLGVNAVDRVLLDAPCSGTGVISKDESVKSSKSLEDIQKCAQLQKELILAAIDMVDASSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREQRFHPSLEKTRRFYPHVQNMDGFFVAKLKKMSNTKPGTKSSEIAEMEEGIVTTLENEKEKSNDGKKENGNATLESESKKTKKRKFPSKPVNGLKENGKESSESEPKKRTKRQLPSKEEISKAREEKRNALREEKRKGVKPQKHKMTKANGNR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01836 623 MobiDBLite consensus disorder prediction 525 552 - -
Phco11g01836 623 Gene3D Vaccinia Virus protein VP39 289 620 IPR029063 -
Phco11g01836 623 Coils Coil 149 169 - -
Phco11g01836 623 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 94 506 IPR023267 GO:0001510
Phco11g01836 623 MobiDBLite consensus disorder prediction 525 623 - -
Phco11g01836 623 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 176 196 IPR023273 GO:0008168
Phco11g01836 623 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 209 221 IPR023273 GO:0008168
Phco11g01836 623 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 232 245 IPR023273 GO:0008168
Phco11g01836 623 Pfam 16S rRNA methyltransferase RsmB/F 290 500 IPR001678 GO:0008168
Phco11g01836 623 MobiDBLite consensus disorder prediction 566 607 - -
Phco11g01836 623 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 289 612 - -
Phco11g01836 623 ProSitePatterns NOL1/NOP2/sun family signature. 369 380 IPR018314 GO:0003723|GO:0008168
Phco11g01836 623 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 186 501 IPR029063 -
Phco11g01836 623 PRINTS RNA (C5-cytosine) methyltransferase signature 424 440 IPR023267 GO:0001510
Phco11g01836 623 PRINTS RNA (C5-cytosine) methyltransferase signature 273 287 IPR023267 GO:0001510
Phco11g01836 623 PRINTS RNA (C5-cytosine) methyltransferase signature 370 382 IPR023267 GO:0001510
Phco11g01836 623 PRINTS RNA (C5-cytosine) methyltransferase signature 484 501 IPR023267 GO:0001510
Phco11g01836 623 PRINTS RNA (C5-cytosine) methyltransferase signature 302 312 IPR023267 GO:0001510
Phco11g01836 623 MobiDBLite consensus disorder prediction 1 129 - -
Phco11g01836 623 FunFam Ribosomal RNA methyltransferase Nop2 180 286 - -
Phco11g01836 623 MobiDBLite consensus disorder prediction 33 58 - -
Phco11g01836 623 Coils Coil 110 130 - -
Phco11g01836 623 MobiDBLite consensus disorder prediction 1 18 - -
Phco11g01836 623 NCBIfam NOL1/NOP2/sun family putative RNA methylase 225 501 IPR011023 GO:0003723|GO:0006396|GO:0008757
Phco11g01836 623 Gene3D Sun protein; domain 3 180 286 - -
Phco11g01836 623 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 213 502 IPR001678 GO:0008168
Phco11g01836 623 Coils Coil 587 607 - -
Phco11g01836 623 MobiDBLite consensus disorder prediction 72 118 - -
Phco11g01836 623 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 209 286 IPR031341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01836 Phco-Chr11 14723048 14728804 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01836 11 14723048 14728804 Phco11g01836 11 14723048 14728804 ECH