Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0809 ATGCTTTTCGCTCTATCTTCATTCCCCATCCCTCAATCCCCAAACCGTAATCAAATCCATAACGTAAAACCTCAATCTTCAGAAACCCTCAAAATTGATCTTCTCCGCAACTTCAACTCTCCATTTGAGCTCAGACAAGTCCACGCTCAGATCATCAAAACCAACGCTCCTCTATCAATCCTCCCCCTTACTCGAGTTGGCCTTGTTTGCGCTTTCACTCCTTCCTTCCACTATGCTCAACAAATTTTCAAGTGCGTCGAAAAGCAAAAACCTGAGACTTTTGTATGGAATTCTTGTTTGAAAGCCTTAGCTGAAGGGGATTCTCCAATCGATGCAATTATGCTTTTTTATAGGTTGCGCCAGTATGATGTTTGCCCGGATACTTTCACTTGTTCTTCTGTTCTCAGGGCTTGTTTGAATCTATTGGACCTTTCAAATGGTAGAATTCTTCATGGGGTTGTAGAGAAAGTCGGATTTCGGTCCAATTTGTATTTGCAAAACATGATTGTTCATTTGTATGCTTCTTGTGGGGAGATGGGGGAAGCACGGTTGTTGTTTGAGAAAATGCCACAAAGAGACGTTGTGACATGGAATATAATGATAGCCCAATTGATAAAGCAGGGAGACCATGAAGGGGCGTATGATTTATTTTCCCGGATGCCTGAGAGAAATGTGAGGTCATGGACTTCTATGATTGCAGGTTATGTTCAGTGTGGGAAGGCAAAGGAAGCTATTCATCTTTTTGCAAAGATGGAAGAAGCGGGGGTGAAGTGTAATGAGGTGACAGTGGTGGCTGTGCTTGCTGCTTGTGCTGATTTGGGTGCACTTGATTTGGGCATGAGGATTCATGAGTACTCAAATCGACATGGGTTTAAGAGGAATGTCCGTATTTCTAATACTCTAATTGATATGTATGTAAAATGTGGATGCTTGGAGGAAGCGTGTAAAGTTTTTGAAGAGATGGAAGAGCGAACTGTTGTGTCATGGTCAGCCATGATTGGAGGGCTGGCAATGCATGGACGAGCTGAGGAAGCTCTAAGACTCTTCTCTGATATGTCCCAGGTGGGCATTGAGCCCAATGGGGTCACTTTCATTGGACTCTTGCATGCTTGTAGTCACATGGGGTTGATAAGTGAGGGGCGCAGATTCTTTGCCAGCATGACTAGAGATTATGGAATAATTCCCCAGATTGAGCATTATGGTTGTATGGTTGATCTTCTGAGTAGGGCAGGGCTCCTTCATGAGGCCCACGAGTTCATCTTGAACATGCCAATGAAGCCAAATGGGGTTGTGTGGGGTGCTCTCCTTGGGGCATGTAGGGTACACAAAAATGTTGAAATGGCAGAAGAAGCAATCAAACACCTTCTTGAATTGGACCCACTTAATGATGGATACTATGTGGTGTTATCAAACATCTATGCCGAAGCAGGACGATGGGAAGACACAGCAAGAGTAAGGAAGTTCATGAAAGATCGACAAGTGAAGAAAACACCTGGGTGGAGTTCAATCACAGTAGATGGGGTGGTCCATGAGTTTGTGGCTGGGGAGGAGAGCCATCCTGACACAGAGCAGATATTCCAGAGGTGGGAAGAGCTGCTGGAAGAAATGAGGCTAAAAGGATATGTGCCAAACACTTCAGTGGTTCTGCTGGACATAGAAGAGGGTGAGAAGGTGAAATTTGTGTCTCGCCACAGTGAGAAACTAGCCCTGGTTTTTGGGCTAATGAACACACCAGCTGAAACACCGATTAGAATTATGAAGAATCTTCGTATCTGTGAGGACTGCCATTCTGCTTTCAAATTGATATCAGCAATTGTTAATAGAGAGATAGTCGTCCGTGACCGGAATCGCTTCCACTGCTTCAATGATAATTCTTGTTCTTGCAGGGACTACTGGTAG 1899 0.4439 MLFALSSFPIPQSPNRNQIHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0809 632 FunFam Pentatricopeptide repeat-containing protein At4g21300 358 526 - -
Vvi19g0809 632 Gene3D Tetratricopeptide repeat domain 343 511 IPR011990 GO:0005515
Vvi19g0809 632 Pfam E motif 442 503 IPR046848 -
Vvi19g0809 632 SUPERFAMILY TPR-like 177 481 IPR011990 GO:0005515
Vvi19g0809 632 FunFam Pentatricopeptide repeat-containing protein At5g15300 182 283 - -
Vvi19g0809 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 324 IPR002885 -
Vvi19g0809 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Vvi19g0809 632 Gene3D Tetratricopeptide repeat domain 280 326 IPR011990 GO:0005515
Vvi19g0809 632 Pfam PPR repeat 399 423 IPR002885 -
Vvi19g0809 632 Pfam PPR repeat 167 193 IPR002885 -
Vvi19g0809 632 Pfam PPR repeat 299 324 IPR002885 -
Vvi19g0809 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Vvi19g0809 632 Pfam PPR repeat family 325 372 IPR002885 -
Vvi19g0809 632 Pfam PPR repeat family 224 271 IPR002885 -
Vvi19g0809 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 223 IPR002885 -
Vvi19g0809 632 Gene3D Tetratricopeptide repeat domain 177 279 IPR011990 GO:0005515
Vvi19g0809 632 Gene3D Tetratricopeptide repeat domain 63 173 IPR011990 GO:0005515
Vvi19g0809 632 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 32 569 IPR046960 GO:0003723|GO:0009451
Vvi19g0809 632 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 284 355 - -
Vvi19g0809 632 NCBIfam pentatricopeptide repeat 227 260 IPR002885 -
Vvi19g0809 632 NCBIfam pentatricopeptide repeat 195 225 IPR002885 -
Vvi19g0809 632 NCBIfam pentatricopeptide repeat 327 360 IPR002885 -
Vvi19g0809 632 NCBIfam pentatricopeptide repeat 299 324 IPR002885 -
Vvi19g0809 632 Pfam DYW family of nucleic acid deaminases 540 632 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0809 Vvi-Chr19 9010621 9012519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0809 111 632 Glycoside Hydrolase AT3G49170 40.417 4.15e-130 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0809 - - vvi:100263516 1271.91