Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01088 ATGGCGCCAGCAACCAGGAGCAAACCTTCAAAATCACCCAAACTCCAAAAAGCTCCAAAAAAAGTACAAATTCTTCCCGTTAAAGACGATTCCTCCTCCGAATCCGAAGAAGAAGCACCGCCACAGCAGTTTGAACTCAACGACGACGGCGGCAATGACTCTGGTTCCGATTCAGACTTATCCTCCGACGACGATCAGTTAGCCGACGATTTCCTTCAAGGAAGCGACAACGAGGGCGACGACGACGAAGAGAAAGCCTCAGGTTCGGAGTCTGGTTCGGAGTTGGATTCTGATTCGGATGACGATGATGGTGATATTGAGAAGAAGTCTAAAGCTATTGATGAAGCTAGGGAGAGAGAGAAAGAGGATGCTGAAGCTGAAATGCAGACTAATATTCAAGAAGAGTCTGATGAGTTTAGATTACCAACCAAAGAGGAACTTGAGGAAGAGGCTCTGCGTCCACCAGATCTTTCCAATCTTCAAAGGAGGATTAAAGAGATTGTCCGGGTTCTTTCCAATTTTAAGGCGTTGAGGCAAGATGAGTCGACGAGGAAGGAATATATTGGACAGCTTAAGAATGATATACGCTCATACTATGGCTACAATGAGTTCCTAATAGGTGCTTTAGTGGAGATGTTCCCGGTTGTTGAACTGATGGAATTAATTGAAGCTTTTGAGAAGCCTCGCCCTATATGTCTGAGGACAAACACTTTAAAGACACGTAGACGGGATTTGGCAGATGTCTTGATAAACAGAGGAGTAAATCTGGATCCCCTGAGCAAATGGTCAAAAGTTGGACTTGTAGTGTATGATTCTCAAGTACCAATTGGTGCTACTCCAGAGTACATGGCTGGTTTTTACATGCTTCAAAGTGCTAGTTCTTTTCTGCCTGTGATGGCCTTGGCTCCTCAAGAAAAGGAACGAATTGTTGATATGGCGGCTGCTCCTGGTGGTAAAACAACTTACATTGCTGCTCTAATGAAAAACTCAGGAATAATTTTTGCAAATGAAATAAAGGTACCACGACTGAAATCTCTGACTGCAAATTTGCATCGGATGGGTGTATCAAATACTGTAGTCTGCAACTATGATGGGAAGGAGCTTCCAAAGGTTTTGGGTCTCAATTCTGTTGATAGGGTATTATTGGATGCACCTTGCAGTGGAACTGGGGTTATATCCAAAGATGAGTCAGTTAAAACATCTAAAAACTATGAAGATATTAAGAAATGTGCCCATCTACAGAAGGAGCTCCTTCTTGCTGCAATTGACATGGTAGATGTTAATTCAAAATCTGGGGGATACATTGTATATTCTACGTGCTCAATCATGGTTGCCGAGAATGAAGCAGTTATTGATTACGCTCTCAAAAGGAGGAATGTTAAACTGGTCCCTTGTGGACTTGACTTTGGGCGTCCAGGGTTCACCAAATTTAGGGAATTGCGGTTTCACCCTTCATTAGATAAGACAAGACGTTTTTATCCTCATGTACACAATATGGATGGATTTTTTGTTGCCAAGTTGAAAAAAATGAAACCTGGTCCAAAACCATCTGAGAAGGAAGAAAAAACAGAGCTTGTGAATGACGGAGAAGAAACAGAGCTTGTGAGTGACGGAGAAGAAACAGAGCTTGTGAAGGACGACGATGAACCAAGCATTGGCATAAAAGAAAATGGAAAACAATCTTCAGAATCTGAATCCAAAAAGAGGAAGAGTGAGAAATTCCTTTCCAAACCAAGTAGTAATGTCAAAGAATCTGCAGAATCTGAATCCAAAAAGAGGAAGAGTGAGAAAATCCTTTCAAAACCAAGTAGTAAAGTCAAAGAATCTTCAGAACCTCCCAAGAAAAGGGTGAAAACGAAATTTCCATCAAAAGAGGAGATTTCAAAATCCAGAGAGGAGATGAGACTTGCTTTAATGGAAAACAAGAGAAAAGGTGTTAAGCAGCCAGAAGAAGAGAGAACTGTAGAAAACAAGAGAACAGGAACTTTTTTTGTGAAAAAGCAGACGAAAAGAGTTAAGAAACTAAAGAAGAAAACGATGACAGTGCAATACAGCAAGTAG 2061 0.4139 MAPATRSKPSKSPKLQKAPKKVQILPVKDDSSSESEEEAPPQQFELNDDGGNDSGSDSDLSSDDDQLADDFLQGSDNEGDDDEEKASGSESGSELDSDSDDDDGDIEKKSKAIDEAREREKEDAEAEMQTNIQEESDEFRLPTKEELEEEALRPPDLSNLQRRIKEIVRVLSNFKALRQDESTRKEYIGQLKNDIRSYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEIKVPRLKSLTANLHRMGVSNTVVCNYDGKELPKVLGLNSVDRVLLDAPCSGTGVISKDESVKTSKNYEDIKKCAHLQKELLLAAIDMVDVNSKSGGYIVYSTCSIMVAENEAVIDYALKRRNVKLVPCGLDFGRPGFTKFRELRFHPSLDKTRRFYPHVHNMDGFFVAKLKKMKPGPKPSEKEEKTELVNDGEETELVSDGEETELVKDDDEPSIGIKENGKQSSESESKKRKSEKFLSKPSSNVKESAESESKKRKSEKILSKPSSKVKESSEPPKKRVKTKFPSKEEISKSREEMRLALMENKRKGVKQPEEERTVENKRTGTFFVKKQTKRVKKLKKKTMTVQYSK 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01088 686 PRINTS RNA (C5-cytosine) methyltransferase signature 432 448 IPR023267 GO:0001510
Vifa2g01088 686 PRINTS RNA (C5-cytosine) methyltransferase signature 378 390 IPR023267 GO:0001510
Vifa2g01088 686 PRINTS RNA (C5-cytosine) methyltransferase signature 281 295 IPR023267 GO:0001510
Vifa2g01088 686 PRINTS RNA (C5-cytosine) methyltransferase signature 310 320 IPR023267 GO:0001510
Vifa2g01088 686 PRINTS RNA (C5-cytosine) methyltransferase signature 492 509 IPR023267 GO:0001510
Vifa2g01088 686 MobiDBLite consensus disorder prediction 510 631 - -
Vifa2g01088 686 MobiDBLite consensus disorder prediction 511 529 - -
Vifa2g01088 686 MobiDBLite consensus disorder prediction 58 85 - -
Vifa2g01088 686 MobiDBLite consensus disorder prediction 640 659 - -
Vifa2g01088 686 FunFam Ribosomal RNA methyltransferase Nop2 188 294 - -
Vifa2g01088 686 Gene3D Vaccinia Virus protein VP39 293 513 IPR029063 -
Vifa2g01088 686 MobiDBLite consensus disorder prediction 104 151 - -
Vifa2g01088 686 MobiDBLite consensus disorder prediction 584 631 - -
Vifa2g01088 686 Gene3D Sun protein; domain 3 188 292 - -
Vifa2g01088 686 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 195 509 IPR029063 -
Vifa2g01088 686 MobiDBLite consensus disorder prediction 530 546 - -
Vifa2g01088 686 Pfam 16S rRNA methyltransferase RsmB/F 298 508 IPR001678 GO:0008168
Vifa2g01088 686 ProSitePatterns NOL1/NOP2/sun family signature. 377 388 IPR018314 GO:0003723|GO:0008168
Vifa2g01088 686 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 101 511 IPR023267 GO:0001510
Vifa2g01088 686 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 184 204 IPR023273 GO:0008168
Vifa2g01088 686 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 217 229 IPR023273 GO:0008168
Vifa2g01088 686 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 240 253 IPR023273 GO:0008168
Vifa2g01088 686 MobiDBLite consensus disorder prediction 1 151 - -
Vifa2g01088 686 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 217 294 IPR031341 -
Vifa2g01088 686 MobiDBLite consensus disorder prediction 547 577 - -
Vifa2g01088 686 NCBIfam NOL1/NOP2/sun family putative RNA methylase 233 509 IPR011023 GO:0003723|GO:0006396|GO:0008757
Vifa2g01088 686 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 221 510 IPR001678 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01088 Vifa-Chr2 294040647 294046837 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01088 K14835 - gmx:100807160 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01088 2 294040647 294046837 Vifa2g01088 2 294040647 294046837 ECH