Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1039 ATGGCTCCTGCAGTGAAGAACAAAATTTCCAAGCCACAAAAATCCACAACGAAGAAGAATATCAAAAACAGTAAACTCATAATTCCCAAACATGATTCTACATCTAAATCCGAACAAGAAGATTTGCCTCAAAAAAACGAAATTGAAGTCGTGGATGATGATTCTGGGTTTTCTTCTGATGGGGATGATCCCTTAGTTGACGATTTCCTCGGAGGAACCGATGATGATGAAGAGAAAGCGTCGGGTTTGGATTCTGATTCGGATGATGAGGATATTGAAACGAAGTCTAGAGCTATTGATGAAGAAAGGGAGAGAGAAAAAGAAGATGCAGATGCTGAAATGCAGCTCAATATCAAAGAAGAATATGATGAGTTTAGATTACCAACTGCGGAGGAACTTGAGGAGGAAGCTCTACGGCCACCTGATATTGTTAATCTCAAGAAGAGAATTGAAGAGATTGTTCGCGTTCTTTCGAATTTTAAGACCTTGAGGAAAGACGGGTCATCAAGGAAGGAGTACATTGATCAGCTTAAGAAAGATATATGTTCCTACTATGGCTACAATGAGTTTCTAATTGGTGCTTTAGAGGAGATGTTTCCAGTTGTTGAATTGATACAACTGATTGAAGCATTTGAAAAGCCTCGGCCTATGTGTTTGAGGACCAACACTTTGAAGACTCGCAGAAGGGATTTGGCAGATGTTTTGATAAACAGAGGAGTAAATCTAGATCCTTTAAGCAAATGGTCAAAAGTTGGACTTGTTGTGTATGATTCTCAAGTACCAATTGGTGCCACTCCCGAGTATATGGCTGGTTTCTACATGCTTCAAGGTGCGAGTTCTTTTCTACCTGTGATGGCATTGGCTCCACAAGAGAAGGAACGAGTTGTTGATATGGCGGCTGCACCTGGTGGCAAAACAACATATATTGCTGCCCTTATGAAGAATACTGCGAAGGGCTTCACTGGGATGAGATTTTGGCTGGCATCCCAGTCCCCCAGTTCGGCTCTCTTGGGCGTCTATCGATGCCGCTATCCCAGTTTGGTGGCGGGATCCCACTGGGACATGGATAACAGGGTATCACGACTGAAGTCACTGACTGCAAATTTGCATCGTATGGGTGTATCAAATACCGCCGTCTGTAATTATGATGCAAAGGAGCTTCCAAAGGTTTTGGGTCAAAACACGGTTGATAGAGTATTATTGGATGCCCCTTGCAGTGGAACTGGGGTTATATCAAAAGATGAGTCTGTTAAAACCTCTAAAGATTTGGAAGATATACAGAAATGTGCCCGTCTACAGAAGGAACTTATTCTTGCTGCAATTGACTTGGTGGATGCAAATTCAAAATCTGGAGGGTACATTGTGTATTCTACCTGTTCAATCATGGTTGCTGAGAATGAAGCAGTTATTGACTATGCACTCAAAAGGAGGGATGTGAAGCTGGTTCCTTGCGGACTTGACTTTGGGCGCCCAGGGTTTACAAAGTTTAGGGAACAACGCTTTCACCCTACCTTAGAGAAGACAAGACGTTTCTATCCTCATGTGCACAATATGGATGGCTTTTTTGTTGCAAAGTTGAAAAAAATTAGCAGCTCAAAGCCAAGTGCAAAATCATCAGAACCATTAGAAAAGGAGGAAGAAGGTATTGAGCTTGTGAAGGAAGAGAAGGCAAGTAATGGGCAAAAAGAAAATGGCAAAAGCTTTCCTGAATCAAAATCCAAAAAGGAGAAGAAAAAGAAATTTGCACCTAAACAAAGTAATGACATCAAAGAAAACGGCGAAGAATCTTCGGAATCAAAATTGAAGAAGGAGAAGAAAAGGAAATTTCCACCCAAACCAAGTAATGACATCAAAGACAATGGCAAAGAGTCTTCTGAATCCGAGTCCAATAAGAGAAAGAAGAGGCAACTTCCATCTAAGGAGGAAATTTCGAAAGCCAGGGAAGAGAAGAGAAATGCTTTAAGAAAAAATAACACCAAAGGTGGTAAGCAACAGAACAGTAAATGA 2007 0.4126 MAPAVKNKISKPQKSTTKKNIKNSKLIIPKHDSTSKSEQEDLPQKNEIEVVDDDSGFSSDGDDPLVDDFLGGTDDDEEKASGLDSDSDDEDIETKSRAIDEEREREKEDADAEMQLNIKEEYDEFRLPTAEELEEEALRPPDIVNLKKRIEEIVRVLSNFKTLRKDGSSRKEYIDQLKKDICSYYGYNEFLIGALEEMFPVVELIQLIEAFEKPRPMCLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQGASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTAKGFTGMRFWLASQSPSSALLGVYRCRYPSLVAGSHWDMDNRVSRLKSLTANLHRMGVSNTAVCNYDAKELPKVLGQNTVDRVLLDAPCSGTGVISKDESVKTSKDLEDIQKCARLQKELILAAIDLVDANSKSGGYIVYSTCSIMVAENEAVIDYALKRRDVKLVPCGLDFGRPGFTKFREQRFHPTLEKTRRFYPHVHNMDGFFVAKLKKISSSKPSAKSSEPLEKEEEGIELVKEEKASNGQKENGKSFPESKSKKEKKKKFAPKQSNDIKENGEESSESKLKKEKKRKFPPKPSNDIKDNGKESSESESNKRKKRQLPSKEEISKAREEKRNALRKNNTKGGKQQNSK 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1039 668 Pfam 16S rRNA methyltransferase RsmB/F 284 318 IPR001678 GO:0008168
Lal11g1039 668 Pfam 16S rRNA methyltransferase RsmB/F 355 527 IPR001678 GO:0008168
Lal11g1039 668 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 356 609 IPR023267 GO:0001510
Lal11g1039 668 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 9 320 IPR023267 GO:0001510
Lal11g1039 668 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 207 529 IPR001678 GO:0008168
Lal11g1039 668 PANTHER BNACNNG49010D PROTEIN 356 609 - -
Lal11g1039 668 PANTHER BNACNNG49010D PROTEIN 9 320 - -
Lal11g1039 668 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 179 529 IPR029063 -
Lal11g1039 668 MobiDBLite consensus disorder prediction 53 89 - -
Lal11g1039 668 MobiDBLite consensus disorder prediction 1 111 - -
Lal11g1039 668 Gene3D Sun protein; domain 3 173 280 - -
Lal11g1039 668 MobiDBLite consensus disorder prediction 9 24 - -
Lal11g1039 668 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 170 190 IPR023273 GO:0008168
Lal11g1039 668 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 203 215 IPR023273 GO:0008168
Lal11g1039 668 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 226 239 IPR023273 GO:0008168
Lal11g1039 668 MobiDBLite consensus disorder prediction 25 52 - -
Lal11g1039 668 ProSitePatterns NOL1/NOP2/sun family signature. 396 407 IPR018314 GO:0003723|GO:0008168
Lal11g1039 668 MobiDBLite consensus disorder prediction 538 656 - -
Lal11g1039 668 MobiDBLite consensus disorder prediction 90 111 - -
Lal11g1039 668 MobiDBLite consensus disorder prediction 533 668 - -
Lal11g1039 668 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 196 280 IPR031341 -
Lal11g1039 668 Gene3D Vaccinia Virus protein VP39 283 623 IPR029063 -
Lal11g1039 668 PRINTS RNA (C5-cytosine) methyltransferase signature 267 281 IPR023267 GO:0001510
Lal11g1039 668 PRINTS RNA (C5-cytosine) methyltransferase signature 296 306 IPR023267 GO:0001510
Lal11g1039 668 PRINTS RNA (C5-cytosine) methyltransferase signature 397 409 IPR023267 GO:0001510
Lal11g1039 668 PRINTS RNA (C5-cytosine) methyltransferase signature 451 467 IPR023267 GO:0001510
Lal11g1039 668 PRINTS RNA (C5-cytosine) methyltransferase signature 511 528 IPR023267 GO:0001510
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1039 Lal-Chr11 14001250 14011798 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1039 K14835 - gmx:100807160 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1039 11 14001250 14011798 Lal11g1039 11 14001250 14011798 ECH