Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0122 ATGGCTGACAACAAAAACCACTCCGAAGTAGCCATACCTGATGAAGGCGAAGAGGTTGATGACTCTCCGATTGAGCAGGTGAGGTTGACGGTTCCAATTACCGACGACCCTACGCAGCCTGTGCTGACATTCAGGACATGGACTTTGGGAATAGCTTCGTGCGTTGTCCTCGCATTCATCAACCAATTCTTTGGCTACAGAACCACCCCTCTTTACGTTTCTTCTGTGTCAGCACAGATTATTTCTCTCCCACTTGGCAAATTCATGGCCAGAACACTTCCGACCAAAGCTTATGTTTTTCCTTTCACCAAGTGGTCGTTCTCTTTGAACCCTGGCCCATTCACTTTAAAGGAGCATGCACTCATCACCATCTTTGCCAGTGCTGGATCTAGTGGTGTTTATGCCATCAACATTATCACTATTGTCAAGGCTTTCTACCACAGGAGCATCCACCCAATTGCTGCTTTCCTGCTCGCGTTATCCACCCAGATGCTTGGTTATGGATGGGCTGGCATTTTCAGAAAATTCCTCGTTGATTCCCCGTACATGTGGTGGCCATCAAACCTTGTCCAGGTGTCTTTATTCAGGGCATTCCATGAAAAGGAGAAAAGGCCTAAAGGAGGAAACACAAGGCTGCAATTCTTTTTGCTGGTGTTTGTGTCAAGTTTTGCTTATTACATCATTCCTGGGTATTTATTCCCAGGAATAGCAACAATCTCGTGGGTTTGCTTAGTGTGGAAAAAGTCCATCCTTGCTCAACAAATTGGTTCGGGTCTTGGTGGGCTTGGCATTGGTTCATTTGGCTTTGACTGGAACACAGTGGCTGGGTTTTTGGGGACCCCTTTGGCTACACCTGGCTTTGCCATCATCAACACACTGGTTGGATTTGTGCTCTTTATGTACGTTCTGATTCCAATTTCATATTGGAACAACGTATATGATGCCAAGAAGTTCCCCATCATCAGTTCTAACACCTTTGATTTCACTGGAAAAAAATATAATGTCACTCGGATTCTCAATGATAAAACTTTTGACATCGATATGGACAGTTATAACAATTACAGCAAGCTCTATCTTAGTATCACGTTTGCATTCGATTATGGATTGAGCTTTGCCTCTCTCACTGCCACCATTTCGCATGTTGTTCTCTTCCATGGAAAAACGATTGTCAAGATGTGGAAGAGGACAACTTCTGCACTAAAAGAAAAAACATTCGGAGATGTGCATACAAGAATTATGAAGAAAAACTATGAACAAGTACCTGAGTGGTGGTTTGTGAGCATTTTGGTTCTAATGGTAGTTGTGGCTCTGATAACTTGTGAAGGCTTTCACAAGCAACTTCAGTTGCCATGGTGGGGAGTTCTGATGTCTCTTGGTATTGCTTTGGTTTTCACTTTGCCAGTTGGAGTAATTCAAGCAACAACAAACATGCAAGCAGGGTTGAACGTGATCACAGAGCTGATAATCGGGTTCATTTACCCCGGAAAGCCACTTGCCAATGTAGCCTTCAAGACATACGGCTACATCAGCATGTCACAGGCACTCGGATTCCTTGGTGACTTCAAACTAGGCCACTATATGAAAATCCCTCCAAAATCTATGTTCATCGTGCAGTTGGTGGGTACGGTGGTTGCTTCATCCGTGTACTTTGGAACAGCATGGTGGCTTCTGACGACTGTTCCAAACATCTGTGATATATCAGTACTGCCAGAAAATAGTCCATGGCAGTGCCCTGGTGACGATGTGTTTTACAATGCTTCGATCATATGGGGAGTGGTGGGTCCAAAGAGAATGTTTACCAAGGATGGAATTTACCCTGGAATGAATTGGTTTTTCCTCATCGGTGCACTTGCTCCTGTTCCGGTGTGGTTCTTTGCTCGGAAATACCCAAACAAGAGGTGGATTGAACTCATCAACATGCCCCTCATCATTATGGGTGCCGGAGCTATTCCTCCGGCGAGAACTGTCAACTACATAACCTGGGGAGCTGTCGGAATCTTCTTCAATTTTTATATTTACAATAAGTTCAAGTCATGGTGGGCTCGCCATACTTACATTCTCTCAGCTGCATTGGATGCTGGGCTTGCTTTCATGGGAGTGGTTCTCTACTTTGCCCTCCAAAGTTACGACATTTTAGGTCCAACCTGGTGGGGTGCCGAAGCTGACCACTGCCCTTTGGCCAGATGTCCCACAGCTCCAGGCATAGTTGCTCATGGATGCCCTACTCTCTGA 2232 0.4516 MADNKNHSEVAIPDEGEEVDDSPIEQVRLTVPITDDPTQPVLTFRTWTLGIASCVVLAFINQFFGYRTTPLYVSSVSAQIISLPLGKFMARTLPTKAYVFPFTKWSFSLNPGPFTLKEHALITIFASAGSSGVYAINIITIVKAFYHRSIHPIAAFLLALSTQMLGYGWAGIFRKFLVDSPYMWWPSNLVQVSLFRAFHEKEKRPKGGNTRLQFFLLVFVSSFAYYIIPGYLFPGIATISWVCLVWKKSILAQQIGSGLGGLGIGSFGFDWNTVAGFLGTPLATPGFAIINTLVGFVLFMYVLIPISYWNNVYDAKKFPIISSNTFDFTGKKYNVTRILNDKTFDIDMDSYNNYSKLYLSITFAFDYGLSFASLTATISHVVLFHGKTIVKMWKRTTSALKEKTFGDVHTRIMKKNYEQVPEWWFVSILVLMVVVALITCEGFHKQLQLPWWGVLMSLGIALVFTLPVGVIQATTNMQAGLNVITELIIGFIYPGKPLANVAFKTYGYISMSQALGFLGDFKLGHYMKIPPKSMFIVQLVGTVVASSVYFGTAWWLLTTVPNICDISVLPENSPWQCPGDDVFYNASIIWGVVGPKRMFTKDGIYPGMNWFFLIGALAPVPVWFFARKYPNKRWIELINMPLIIMGAGAIPPARTVNYITWGAVGIFFNFYIYNKFKSWWARHTYILSAALDAGLAFMGVVLYFALQSYDILGPTWWGAEADHCPLARCPTAPGIVAHGCPTL* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0122 743 Pfam OPT oligopeptide transporter protein 42 705 IPR004813 GO:0035673
Vra6g0122 743 PANTHER OLIGOPEPTIDE TRANSPORTER OPT FAMILY PROTEIN 17 742 - -
Vra6g0122 743 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 26 707 IPR004813 GO:0035673
Vra6g0122 743 PANTHER ISP4 LIKE PROTEIN 17 742 IPR004648 GO:0055085
Vra6g0122 743 TIGRFAM ISP4_OPT: small oligopeptide transporter, OPT family 20 709 IPR004648 GO:0055085
Vra6g0122 743 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0122 Vra-Chr6 866095 869857 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0122 3 741 Organic Solute Cotransporters AT4G26590 67.881 0.0 1047
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0122 - - gmx:100776230 1306.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0122 6 866095 869857 Vra6g0122 6 866095 869857 ECH