Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02348 ATGGCTCCCACGAGGAAGAAACTTTCAAAGGCACGCAAGTCCCCGAAGAACCCTAAGAAGACCCAACCCAAGCACGATTCCAGCTCCGAATCCGAAGAAGACATGCCGTCGCAGCAGCAGCAACTGCAGCAATTCGAGCTCGGCGATGACAACTCCGATTCCGCGTCGGAGCTCTCTTCTGAAGGGGATGATCCATTAGCGGACGATTTCCTCCAAGGAAGCGATGATGACGAAGGGAAAGCCCCGGGTTCGGACTCGAGTTCTGGTTCTGATTCGGATGATTATGATATCGAGGAGAAGTCGAAAGCTATTGATGAAGAGAAGGCGAGAGAGGAAGAGGACGCGGAAGCCGAAATGCAGCTCAATATCAACCAAGAGTCTGATGAGTTCAGATTGCCGACCCAAGAGGAACTCGAAGAAGAGGCTTTGCGTCCACCTGATCTTTCCAATCTCCAAAGGAGAATTAAAGAAATTGTTCGTGTTCTTTCAAATTTTAAGGTTTTGAGGCAAGATGGGGCAACCAGGAAAGATTATGTTGAACAGCTTAAGAAAGATATTTGCACGTACTATGGCTACAATGAGTTTCTAATGGGTGCTCTAGTGGAGATGTTTCCAGTTGTTGAACTTATGGAACTGATTGAAGCCTTTGAAAAGCCTCGCCCTATATGTCTAAGGACTAATACATTGAAGACACGCAGAAGGGATTTGGCTGATGTTTTGATAAATAGGGGTGTTAATTTGGATCCTTTAAGCAAATGGTCAAAGGTTGGACTTGTTGTGTATGATTCTCAAGTGCCAATTGGTGCCACTCCTGAGTATATGGCTGGTTTCTACATGTTACAAAGTGCAAGCTCTTTTCTGCCTGTCATGGCCTTGGCTCCTCAAGAGAAGGAACGAGTTGTTGATATGGCAGTGTCTGTGCTTCGTAGTGCTGCACCAGGTGGTAAAACAACTTACATTGCTGCGCTAATGAAGAACACTGGAATAATTTTTGCAAATGAAATGAAGGTACCAAGGCTTAAGTCATTGACTGCAAATTTGCATCGTTTGGGTGTATCCAACACTGTAGTCTGTAACTATGATGGAAAGGAGCTTCCAAAAGTTCTTGGTGTCAATGCTGTTGATAGAGTATTATTGGATGCCCCTTGCAGTGGAACCGGGGTTATATCGAAAGATGAGTCTGTTAAAACCTCTAAAAGTTTGGAAGATATACAGAAGTGTGCGCAGCTACAGAAGGAGCTAATTCTTGCGGCAATTGACATGGTGGATGCTAATTCAAAATCTGGGGGATATATTGTTTATTCTACATGCTCAATCATGGTTGCTGAGAATGAAGCAGTTATTGACTATGCACTCAAAAAGCGGGATGTTAAACTGGTTCCGTGTGGACTTGATTTTGGTCGTCCAGGTTTTATAAGGTTTAGGGAACAACGTTTTCACCCTTCTTTGGAAAAGACAAGGCGTTTCTATCCTCACGTACAAAATATGGATGGGTTTTTTGTTGCAAAGTTAAAAAAAATGAGTAGCTCAAAGCCTGGTGCAAAATCATCAGAAGTAGCCGAGAAGGAAGAAGATATTGCTACTACGGTGGAGAATGAAAAGGAGAAATCAAATGATGGCAATAAAGAAAATGGGAATGCAGCTTCCGAATCTGAATCCAAAAAGACGAAGAAAAGAAAGTTCCCCTCTAAACCAGTAAACGGTGTAAAAGAAAATGGCAAAGAATCTTCTGAATCTGAGCCCAAAAAGAGGACGAAGAGGCAATTTCCATCGAAGGAAGAGATTTCAAAAGCCAGGGAGGAGAAGAGGGACGCTTTACGAGAAAAAAAGAGAAAAGGTATTAAACAGCAGAAGCAAAAAATGACCAAAGAAAATGGCAAAAAGCAGTGA 1890 0.4296 MAPTRKKLSKARKSPKNPKKTQPKHDSSSESEEDMPSQQQQLQQFELGDDNSDSASELSSEGDDPLADDFLQGSDDDEGKAPGSDSSSGSDSDDYDIEEKSKAIDEEKAREEEDAEAEMQLNINQESDEFRLPTQEELEEEALRPPDLSNLQRRIKEIVRVLSNFKVLRQDGATRKDYVEQLKKDICTYYGYNEFLMGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAVSVLRSAAPGGKTTYIAALMKNTGIIFANEMKVPRLKSLTANLHRLGVSNTVVCNYDGKELPKVLGVNAVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAQLQKELILAAIDMVDANSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREQRFHPSLEKTRRFYPHVQNMDGFFVAKLKKMSSSKPGAKSSEVAEKEEDIATTVENEKEKSNDGNKENGNAASESESKKTKKRKFPSKPVNGVKENGKESSESEPKKRTKRQFPSKEEISKAREEKRDALREKKRKGIKQQKQKMTKENGKKQ 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02348 629 Coils Coil 109 129 - -
Vimu2g02348 629 Gene3D Vaccinia Virus protein VP39 288 628 IPR029063 -
Vimu2g02348 629 MobiDBLite consensus disorder prediction 33 59 - -
Vimu2g02348 629 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 94 509 IPR023267 GO:0001510
Vimu2g02348 629 PRINTS RNA (C5-cytosine) methyltransferase signature 375 387 IPR023267 GO:0001510
Vimu2g02348 629 PRINTS RNA (C5-cytosine) methyltransferase signature 307 317 IPR023267 GO:0001510
Vimu2g02348 629 PRINTS RNA (C5-cytosine) methyltransferase signature 429 445 IPR023267 GO:0001510
Vimu2g02348 629 PRINTS RNA (C5-cytosine) methyltransferase signature 489 506 IPR023267 GO:0001510
Vimu2g02348 629 PRINTS RNA (C5-cytosine) methyltransferase signature 272 286 IPR023267 GO:0001510
Vimu2g02348 629 MobiDBLite consensus disorder prediction 571 611 - -
Vimu2g02348 629 Coils Coil 592 612 - -
Vimu2g02348 629 ProSitePatterns NOL1/NOP2/sun family signature. 374 385 IPR018314 GO:0003723|GO:0008168
Vimu2g02348 629 NCBIfam NOL1/NOP2/sun family putative RNA methylase 224 506 IPR011023 GO:0003723|GO:0006396|GO:0008757
Vimu2g02348 629 Pfam 16S rRNA methyltransferase RsmB/F 289 505 IPR001678 GO:0008168
Vimu2g02348 629 MobiDBLite consensus disorder prediction 1 142 - -
Vimu2g02348 629 MobiDBLite consensus disorder prediction 510 629 - -
Vimu2g02348 629 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 208 285 IPR031341 -
Vimu2g02348 629 MobiDBLite consensus disorder prediction 1 19 - -
Vimu2g02348 629 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 212 507 IPR001678 GO:0008168
Vimu2g02348 629 MobiDBLite consensus disorder prediction 516 541 - -
Vimu2g02348 629 Gene3D Sun protein; domain 3 178 285 - -
Vimu2g02348 629 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 175 195 IPR023273 GO:0008168
Vimu2g02348 629 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 208 220 IPR023273 GO:0008168
Vimu2g02348 629 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 231 244 IPR023273 GO:0008168
Vimu2g02348 629 FunFam Ribosomal RNA methyltransferase Nop2 179 285 - -
Vimu2g02348 629 MobiDBLite consensus disorder prediction 93 117 - -
Vimu2g02348 629 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 184 506 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02348 Vimu-Chr2 18952719 18959060 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02348 K14835 - gmx:100807160 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02348 2 18952719 18959060 Vimu2g02348 2 18952719 18959060 ECH