Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1233 ATGGCTCCCGCCGCAATCAAGAAGAAAGCTACAAAACAGCAACGCAAATCTCCGATGAAACCCAAAAAACCCAAGCACTTCACTCCCAAGGAAGATTCTCCCGCCGAATCCGAAGAAGAAGCTCCACAGCTACTCGAACTCGGAAGCGACGACGGCGGCGGCGACGACTCCGCTTCTGATTTCTCCGACGGGGATGATCCTTTGGTTGACGATTTCCTCCAAGGAAGTGATGATAATGAAGGGAAAGCCTCGGCCTCGGCTTCGGGTTCGGAATCTGATTCTGATTCTGATTCGGATATTGAGGGGAGGTCGGGAAGGATTGATAAAGAAAGGAAGAGAGTAGAAGAGGATGCGATAGCTGAATTGCAGCTCAATATCAAAGATGAGTCTGACGAGTTCAGATTACCAACCAAGCAGGAACTTGAGGAGGAGACTCAACGCCCACCTGATCTTCCCAACCTTCAGAGGAGAATTAAAGAGATTGTTCGCGTTCTTTCAAATTTTAAGGCCTTGAGGCAAGAGGATGCGACAAGGAAGGATTACATTGAGCAGCTCAAGACTGATATATGTTCGTACTATGGCTACAATGAGTTTCTAATTGGCGCTCTAGTTGAGATATTTCCAGTTGTTGAACTTATGGAGCTGATTGAAGCCTTTGAAAAGCCTCGCCCTACATGTCTGAGGACTAACACTTTAAAGACACGTAGACGGGATTTAGCAGATGTTTTGATAAACAGAGGAGTAAATCTGGATCCTCTAAGCAAATGGTCAAAAGTTGGACTTGTTGTGTATGATTCTCAAGTACCAATTGGTGCCACTCCAGAGTATATGGCTGGTTTCTACATGCTTCAAAGTGCAAGTTCATTTCTTCCTGTGATGGCCTTGGCTCCTCAAGAGAAGGAACGTGTTGTTGATATGGCGGCTGCGCCTGGTGGTAAAACAACATATATTGCCGCTCTGATGAAGAACACTGGTATAATTTTTGCAAATGAGATGAAGGTACCACGGCTCAAGTCACTGACTGCAAATTTGCATCGTATGGGTGTATCAAACACTGTAGTATGTAACTATGATGGAAAGGAGCTTCCGAAGGTTTTGGGTCTCAATACCGTTGATAGGGTATTATTGGATGCTCCTTGCAGTGGAACTGGGGTTATATCCAAAGATGAGTCCGTTAAAACCTCTAAAGATTTGGAAGATATACAGAAATGTGCCCAACTACAGAAGGAGCTCATTCTTGCTGCAATTGACATGGTGGATGCTAATTCAAAATCTGGGGGGTACCTTGTATATTCCACATGCTCAATTATGGTTGCTGAGAATGAAGCAGTTATTGATTATGCCCTTAAAAGGAGGGATGTTAAGCTGGTTGCTTGTGGACTTAACTTTGGACGTCCAGGGTTTACAAAGTTTAGGGAGCAACGCTTTCATCGGTCCTTAGATAAGACGAGACGTTTCTATCCTCATGTACACAATATGGATGGTTTTTTTGTTGCGAAGTTGAAAAAATTGAGCAACTCAAAGCAAGGTGCAAAACCATCAGAAACATCTGAAAATGTCGAAATAGATACAGAGGTTGTGGAGGAAGAGGACAAACCAAGTAATGGCGTAAAAGAAAATGGCAAACAAACTTCTGAATCTGAATTGAAAACGAAGGAAAAAAGGAAATTCCCATCAAAACCAAGTAATGGTATTAAAGCAAATGGCAAAGTGTCTTCCGAACCAGAATCCAAAAGAAGGAAGAAAAGGCTATTTCCATCTAAAGAGGAGATTTCAAATGCCAGGGAGCAGAAGAGGAGTGCTTTAAGAGAAAACAAGGAAAAGGGTGGTAAGCAACAGAGGTCAAAAAGGCAGTGA 1857 0.4324 MAPAAIKKKATKQQRKSPMKPKKPKHFTPKEDSPAESEEEAPQLLELGSDDGGGDDSASDFSDGDDPLVDDFLQGSDDNEGKASASASGSESDSDSDSDIEGRSGRIDKERKRVEEDAIAELQLNIKDESDEFRLPTKQELEEETQRPPDLPNLQRRIKEIVRVLSNFKALRQEDATRKDYIEQLKTDICSYYGYNEFLIGALVEIFPVVELMELIEAFEKPRPTCLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGIIFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKDLEDIQKCAQLQKELILAAIDMVDANSKSGGYLVYSTCSIMVAENEAVIDYALKRRDVKLVACGLNFGRPGFTKFREQRFHRSLDKTRRFYPHVHNMDGFFVAKLKKLSNSKQGAKPSETSENVEIDTEVVEEEDKPSNGVKENGKQTSESELKTKEKRKFPSKPSNGIKANGKVSSEPESKRRKKRLFPSKEEISNAREQKRSALRENKEKGGKQQRSKRQ* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1233 618 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 215 504 IPR001678 GO:0008168
Lja6g1233 618 MobiDBLite consensus disorder prediction 572 611 - -
Lja6g1233 618 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 211 288 IPR031341 -
Lja6g1233 618 Coils Coil 588 608 - -
Lja6g1233 618 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 188 503 IPR029063 -
Lja6g1233 618 MobiDBLite consensus disorder prediction 9 23 - -
Lja6g1233 618 MobiDBLite consensus disorder prediction 96 112 - -
Lja6g1233 618 Pfam 16S rRNA methyltransferase RsmB/F 292 502 IPR001678 GO:0008168
Lja6g1233 618 MobiDBLite consensus disorder prediction 1 112 - -
Lja6g1233 618 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 211 223 IPR023273 GO:0008168
Lja6g1233 618 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 178 198 IPR023273 GO:0008168
Lja6g1233 618 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 234 247 IPR023273 GO:0008168
Lja6g1233 618 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 8 588 IPR023267 GO:0001510
Lja6g1233 618 MobiDBLite consensus disorder prediction 507 618 - -
Lja6g1233 618 MobiDBLite consensus disorder prediction 529 560 - -
Lja6g1233 618 Gene3D Vaccinia Virus protein VP39 291 608 IPR029063 -
Lja6g1233 618 MobiDBLite consensus disorder prediction 56 73 - -
Lja6g1233 618 Coils Coil 112 132 - -
Lja6g1233 618 MobiDBLite consensus disorder prediction 79 93 - -
Lja6g1233 618 PRINTS RNA (C5-cytosine) methyltransferase signature 304 314 IPR023267 GO:0001510
Lja6g1233 618 PRINTS RNA (C5-cytosine) methyltransferase signature 426 442 IPR023267 GO:0001510
Lja6g1233 618 PRINTS RNA (C5-cytosine) methyltransferase signature 486 503 IPR023267 GO:0001510
Lja6g1233 618 PRINTS RNA (C5-cytosine) methyltransferase signature 275 289 IPR023267 GO:0001510
Lja6g1233 618 PRINTS RNA (C5-cytosine) methyltransferase signature 372 384 IPR023267 GO:0001510
Lja6g1233 618 PANTHER BNACNNG49010D PROTEIN 8 588 - -
Lja6g1233 618 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 227 503 IPR011023 GO:0003723|GO:0006396|GO:0008757
Lja6g1233 618 Gene3D Sun protein; domain 3 181 288 - -
Lja6g1233 618 ProSitePatterns NOL1/NOP2/sun family signature. 371 382 IPR018314 GO:0003723|GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1233 K14835 - gmx:100807160 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1233 6 36205807 36217657 Lja6g1233 6 36205807 36217657 ECH