Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2053 ATGGCTCCTGCAGCGCTTACTAAGAAGAAGGCTTCGAAATTACAGAAAGCTCCAccgaagaagaagcaaaagaagcAAAATAATGAGCTGGTCGGTCCGAAGGTCGCAATTGTGAATGAGGTCTCTGACCATTCTGACAGTGAAGACGAGGAGATGGCTATACAGGAAGAGTCTGAAGGAGATGAACCGGGATACGATTCTGGGTCTGCTTCTGAAGCTTCTTCTGATGGTGATAATCCTTTCACTGACGATTTTCTCCAAGGAAGTGATGATGAAGAGAAAGGCTCAGCCTCGGATTCAGGTTCTGATATTGATTCTGACGAAGAAGATATTGAAAAGAAGTCCAGAGCTATTGATGAAGAAAGGGCGCGAGAAGAAGCAGATGCAGAAGCTGAAATGCAGCTCAATATTCAAGGAGAATCTGATGAGTTTAGATTGCCGACCAAGGAGGAACTTGAGGAAGAGGCCCTACGTCCACCTGATCTACCCAATCTTCAAAGGAGAATGAAAGAGATTGTTCGTGTTCTCTCCAATTTTAAGGCTTTGAGGCAAGAAGGGTCTACAAGGAAGGAATATGTTGAACTGCTTAAGAAAGATATATGTTCATACTATGGCTACAATGAGTTTCTTATTGGGGCTTTGGCGGAGATGTTTCCAGTTGTTGAACTTATGGAATTGATTGAAGCCTTTGAAAAGCCACGGCCTATATGTCTTAGGACTAACACGTTGAAGACCCGCAGACGGGATTTGGCTGATGTTTTGATAAACAGAGGAGTCAATCTGGATCCTTTAAGCAAATGGTCAAAGGTTGGACTGGTTGTCTATGATTCTCAAGTACCTATTGGTGCCACTCCCGAGTATATGGCTGGTTTCTATATGCTTCAAAGTGCAAGTTCTTTTCTGCCTGTGATGGCCTTGGCTCCTCAAGAGAAGGAAAGAGTTGTTGATATGGCgGCTGCACCTGGTGGTAAAACAACTTATATAGCTGCTCTTATGAAGAATACTGgaatagtttttgccaatgaaatGAAGGTGCCACGGCTTAAATCACTTACAGCAAATTTGCATCGTATGGGAGTGTCAAACACCGTAGTTTGTAACTATGACGGGAAAGAGCTTCCAAAGGTTTTGGGTCTCAATGCTGTTGATAGAGTATTATTGGATGCCCCTTGCAGTGGTACTGGGGTTATATCCAAAGATGAGTCTGTTAAAACCTCTAAAAATTTGGAAGATATACAGAAATGTGCCAATCTACAGAAGCAACTAATTCTTGCTGCAATCGATATGGTTGATGCTAATTCAAAATCCGGGGGTTACGTTGTTTATTCCACATGTTCCATCATGGTTGCCGAGaatGAAGCAGTTATTGACTATGCTCTAAAAAAGAGAGATGTCAAACTAGTGCCTTGCGGACTTGACTTTGGGCGTCCTGGGTTTATAAGGTTCAGGGAACAACGTTTTCACCCTTCATTGGAAAAGACTAGGCGTTTCTATCCTCATGTTCAAAATATGGATGGGTTTTTTGTTGCCAAGTTGAAAAAGATGAGCAACTCAAAGGCAAATGCAAAACCATTGGAGCCAGAAGAAGAGGTGGAAGAAGGTGCCAAGCTTAAGGAGAATACAAGTAATGGCCAAAAGCAAGATGCAAATAGCAAAAAGCAAAATGCTAATGGCAAAGAAACTTCTGCATCTGAATccaaaaagaggaagaaaaggcaATTTCCATCGAAAGAGGAAATTTCAAAAGCCAGggaagagaagagaaaagctttaagagaaaataaaggGAAAAAGTCAGGAAGCAAGAAGACTGAAAATGGGAATTGA 1827 0.3979 MAPAALTKKKASKLQKAPPKKKQKKQNNELVGPKVAIVNEVSDHSDSEDEEMAIQEESEGDEPGYDSGSASEASSDGDNPFTDDFLQGSDDEEKGSASDSGSDIDSDEEDIEKKSRAIDEERAREEADAEAEMQLNIQGESDEFRLPTKEELEEEALRPPDLPNLQRRMKEIVRVLSNFKALRQEGSTRKEYVELLKKDICSYYGYNEFLIGALAEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGIVFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKELPKVLGLNAVDRVLLDAPCSGTGVISKDESVKTSKNLEDIQKCANLQKQLILAAIDMVDANSKSGGYVVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREQRFHPSLEKTRRFYPHVQNMDGFFVAKLKKMSNSKANAKPLEPEEEVEEGAKLKENTSNGQKQDANSKKQNANGKETSASESKKRKKRQFPSKEEISKAREEKRKALRENKGKKSGSKKTENGN 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2053 608 ProSitePatterns NOL1/NOP2/sun family signature. 382 393 IPR018314 GO:0003723|GO:0008168
Sto9g2053 608 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 219 299 IPR031341 -
Sto9g2053 608 Pfam 16S rRNA methyltransferase RsmB/F 303 513 IPR001678 GO:0008168
Sto9g2053 608 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 189 209 IPR023273 GO:0008168
Sto9g2053 608 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 222 234 IPR023273 GO:0008168
Sto9g2053 608 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 245 258 IPR023273 GO:0008168
Sto9g2053 608 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 199 514 IPR029063 -
Sto9g2053 608 PRINTS RNA (C5-cytosine) methyltransferase signature 286 300 IPR023267 GO:0001510
Sto9g2053 608 PRINTS RNA (C5-cytosine) methyltransferase signature 315 325 IPR023267 GO:0001510
Sto9g2053 608 PRINTS RNA (C5-cytosine) methyltransferase signature 383 395 IPR023267 GO:0001510
Sto9g2053 608 PRINTS RNA (C5-cytosine) methyltransferase signature 437 453 IPR023267 GO:0001510
Sto9g2053 608 PRINTS RNA (C5-cytosine) methyltransferase signature 497 514 IPR023267 GO:0001510
Sto9g2053 608 Gene3D Sun protein; domain 3 193 299 - -
Sto9g2053 608 MobiDBLite consensus disorder prediction 44 63 - -
Sto9g2053 608 MobiDBLite consensus disorder prediction 68 82 - -
Sto9g2053 608 MobiDBLite consensus disorder prediction 519 608 - -
Sto9g2053 608 MobiDBLite consensus disorder prediction 540 561 - -
Sto9g2053 608 MobiDBLite consensus disorder prediction 562 608 - -
Sto9g2053 608 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 226 515 IPR001678 GO:0008168
Sto9g2053 608 Coils Coil 104 124 - -
Sto9g2053 608 PANTHER BNACNNG49010D PROTEIN 9 594 - -
Sto9g2053 608 MobiDBLite consensus disorder prediction 1 145 - -
Sto9g2053 608 Gene3D Vaccinia Virus protein VP39 302 605 IPR029063 -
Sto9g2053 608 MobiDBLite consensus disorder prediction 87 131 - -
Sto9g2053 608 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 9 594 IPR023267 GO:0001510
Sto9g2053 608 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 238 514 IPR011023 GO:0003723|GO:0006396|GO:0008757
Sto9g2053 608 MobiDBLite consensus disorder prediction 523 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2053 Sto-Chr9 24484268 24489369 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2053 K14835 - gmx:100807160 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2053 9 24484268 24489369 Sto9g2053 9 24484268 24489369 ECH