Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1106 ATGGCTCCCGCTAGGAAGAAAGCTTCGAAGCCACGCAAATCCCCGAAGAGCCCCAAGAAGACCCAACCCGAACACGATTCCAGCGCCGAATCCGAAGAAGAGACGCCGCCGCAGCTGCAGCCACAGCAACTCGAGCTCGGCGGCGACAGCTCCGATTCCACCTCGGAGCTCTCTTCCGACGGTGATGATCCCTTGGTCGACGACTTCCTCCAAGGAAGCGATGATGACGAAGAAAAAGCCTCAGGTTCGGAGTCAGGTTTGGAGTCTGGTTCGGGTTCCGATTCGGATGATTACGATATCGAAGAGAAGTCGAGAGCTATTGATGACGAAAAGGCGAGAGAGGAAGAGGATGCGGAAGCTGAAATGCAGCTCAACATCAACCAAGAGTCTGATGAGTTTAGATTGCCTACCAAAgagGAACTTGAGGAAGAGGCTTTGCGCCCACCTGATCTTCCCAATCTCCAGAGGAGGATTAAAGAGATTGTTCGTGTTCTTTCGAATTTTAAGGCTTTGAGGCAAGATGGGTTAACGAGGAAAGATTACGTTGAACAGCTTAAGAAAGATATATGTATGTACTATGGCTACAATGAGTTTCTAATTGGTGCTCTAGTGGAGATGTTTCCAGTTGTTGAACTTATGGAACTGATTGAAGCCTTTGAGAAGCCACGTCCTATATGTCTGAGGACCAACACATTGAAGACACGCAGAAGGGATTTGGCAGATGTTTTAATAAATAGGGGAGTAAATTTGGATCCTTTAAGCAAATGGTCAAAGGTTGGACTTGTTGTGTATGATTCACAAGTGCCAATTGGTGCCACTCCTGAGTATATGGCTGGTTTCTACATGCTACAAAGTGCAAGCTCTTTTCTTCCTGTGATGGCCTTGGCTCCTCAAGAGAAGGAACGAGTTGTTGATATGGCAGCTGCACCTGGTGGTAAAACAACTTACATTGCTGCTCTAATGAAGAATACTGGATTAATTTTTGCAAATGAAATGAAGGTACCAAGGCTTAAGTCACTGACTGCAAATTTGCATCGTATGGGTGTATCTAACACTGTAGTCTGTAACTATGATGGAAAGGAGCTTCCAAAGGTTTTAGGTGTCAATGCCGTTGATAGAGTATTATTGGATGCCCCTTGCAGTGGAACTGGGGTTATATCCAAAGATGAGTCTGTTAAATCCTCTAAAAGTGTTGAAGATATACAGAAATGTGCGCATCTACAGAAGgAGCTCATTCTTGCAGCAATTGACATGGTTGATGCTAATTCAAAATCTGGGGGATACATTGTTTATTCTACATGCTCAATCATGGTTGCCGAGAATGAAGCAGTTATTGACTATGCCCTCAAAAAGCGGGATGTTAAACTGGTTCCTTGTGGACTTGATTTTGGGCGTCCAGGAAAAGACAAGGCGTTTCTATCCCCACGTACACAATATGGATGGGTTTTTTGTTGCAAAGTTGAAAAAATGAGCAGCTCAAAGCCGGGTGCAAAACCATCAGAAACAGCTGAGAAGGAAGACGGTACTACTTTTGTGAAGGAAAAGGAGAAATCAAGTgatgacataaaagaaaatggcaATGTATCTTCTAAATCTGAATccaaaaagaggaagaaaaggaatTTTCCATCAAAACCAAGTAACAGTCTAAAAGAAAATGGCAAAGAATCTTCTGAATCTGAACccaaaaagaggaagaaaaggcaATTTCCATCTAAGGAAGAGATTTCAAAAGCCAGGGAGGAGAAGAGAAACGctttaagagataaaaagagtAAAGGTAGAAAACAACAGAACCAAAAATGA 1806 0.4153 MAPARKKASKPRKSPKSPKKTQPEHDSSAESEEETPPQLQPQQLELGGDSSDSTSELSSDGDDPLVDDFLQGSDDDEEKASGSESGLESGSGSDSDDYDIEEKSRAIDDEKAREEEDAEAEMQLNINQESDEFRLPTKEELEEEALRPPDLPNLQRRIKEIVRVLSNFKALRQDGLTRKDYVEQLKKDICMYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGLIFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKELPKVLGVNAVDRVLLDAPCSGTGVISKDESVKSSKSVEDIQKCAHLQKELILAAIDMVDANSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGKDKAFLSPRTQYGWVFCCKVEKMSSSKPGAKPSETAEKEDGTTFVKEKEKSSDDIKENGNVSSKSESKKRKKRNFPSKPSNSLKENGKESSESEPKKRKKRQFPSKEEISKAREEKRNALRDKKSKGRKQQNQK 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1106 601 MobiDBLite consensus disorder prediction 491 601 - -
Ssu9g1106 601 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 227 453 IPR011023 GO:0003723|GO:0006396|GO:0008757
Ssu9g1106 601 MobiDBLite consensus disorder prediction 96 117 - -
Ssu9g1106 601 MobiDBLite consensus disorder prediction 552 588 - -
Ssu9g1106 601 MobiDBLite consensus disorder prediction 17 32 - -
Ssu9g1106 601 MobiDBLite consensus disorder prediction 1 16 - -
Ssu9g1106 601 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 211 223 IPR023273 GO:0008168
Ssu9g1106 601 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 178 198 IPR023273 GO:0008168
Ssu9g1106 601 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 234 247 IPR023273 GO:0008168
Ssu9g1106 601 Coils Coil 573 593 - -
Ssu9g1106 601 Pfam 16S rRNA methyltransferase RsmB/F 292 459 IPR001678 GO:0008168
Ssu9g1106 601 Gene3D Sun protein; domain 3 181 288 - -
Ssu9g1106 601 MobiDBLite consensus disorder prediction 33 60 - -
Ssu9g1106 601 ProSitePatterns NOL1/NOP2/sun family signature. 371 382 IPR018314 GO:0003723|GO:0008168
Ssu9g1106 601 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 187 465 IPR029063 -
Ssu9g1106 601 Gene3D Vaccinia Virus protein VP39 291 598 IPR029063 -
Ssu9g1106 601 Coils Coil 112 132 - -
Ssu9g1106 601 MobiDBLite consensus disorder prediction 1 117 - -
Ssu9g1106 601 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 215 490 IPR001678 GO:0008168
Ssu9g1106 601 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 211 288 IPR031341 -
Ssu9g1106 601 PRINTS RNA (C5-cytosine) methyltransferase signature 372 384 IPR023267 GO:0001510
Ssu9g1106 601 PRINTS RNA (C5-cytosine) methyltransferase signature 426 442 IPR023267 GO:0001510
Ssu9g1106 601 PRINTS RNA (C5-cytosine) methyltransferase signature 304 314 IPR023267 GO:0001510
Ssu9g1106 601 PRINTS RNA (C5-cytosine) methyltransferase signature 275 289 IPR023267 GO:0001510
Ssu9g1106 601 PANTHER BNACNNG49010D PROTEIN 7 566 - -
Ssu9g1106 601 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 7 566 IPR023267 GO:0001510
Ssu9g1106 601 MobiDBLite consensus disorder prediction 499 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1106 Ssu-Chr9 42716042 42724670 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1106 K14835 - gmx:100789776 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1106 9 42716042 42724670 Ssu9g1106 9 42716042 42724670 ECH