Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1105 ATGGCTTACGCTGCGACTGATAATGACACTTCCGATTACTCTGAAAGCGAAGACGAGGAGATGTTAGGATCCAACAAGACCGAAGGAGAAGAACTAGAAGACGATTCAGGGTCTGCCTCCGAAGATTCTTTTGACGGCGATAATCCTCTGGCTAATGATATCTTCCAAGGAAGTGACGATGAAGGTACTCCAGAGGAAAGGGATGACTCGGGTCCGGGTACAGACTCGAATTCTGATTCTGATCATGATATTGAGAAAAAGTCAAGAGCTATTGATGAGGAAAGGGCGCGAGAAGAAGAAGATGCAGAAGCTGAAATAAAGACCAATATTCAAGAGGAATCTGATGAGTTTAGATTGCCGACCAAGGAGGAACTCGAGGAAGAGGCTTTACGTCCACCTGATCTTCCAAATCTTCAGGGAAGAATCAAAGAGATGGTTCGCGTTCTTTCCAATTTTAAGGCTTTGAGGAAAGAAGGGCCAGCAAGAAATGATTACATTAACCAGCTAAAGAAAGATTTATGTTCATATTATGGGTATAACGAGTTTCTTATTGGCGCTCTGGTTGAGCTGTTTCCAGTTGTTGAACTGATGGAATTGATTGAAGCATTTGAAAAGTCACGGCCTTTATGTCTAAGGACTAACACTTTGAAGACACGCAGACGGGATTTGGCGGATGTTTTAATAAACAGAGGAGTAAATCTAGATCCTTTAAGTAAATGGTCAAAAGTTGGACTTGTTGTGTATGAATCTCAAGTGCCAATTGGTGCCACTCCTGAGTATATGGCTGGTTTCTATATGCTTCAAAGTGCTAGTTCTTTTCTGCCTGTGATGGCCTTGGCTCCTCAAGAGAAGGAACGGATTGTCGATATGGCAGCTGCACCTGGTGGTAAAACAACTTATATTGCTGCTCTTATGAAGAATACTGGAATTATTTTTGCAAATGAAATGAAGGTGGCCCGGCTTAAATCACTTACTGCAAATTTGCATCGTATGGGAGTGTCAAACACTGTAGTCTGTAACTACGATGGAAAGGAGCTCCCCAAGGTCTTGGGTCTCAATTCTGTTGATAGGGTGTTATTGGATGCTCCTTGCAGTGGAACTGGGGTTATATCCAAGGACGAGTCTGTGAAAACCTCTAAAAATCTGGAAGATATACAAAAGTGTTCCCATCTACAAAAGCAATTGATTCTTTCTGCCATTGACATGGTGGATGCTAATTCAAAATCTGGGGGTTATATTGTTTATTCGACTTGCTCCATCATGGTGGCAGAGAATGAAGCAGTCATTGACTATGCTCTTAAAAATAGGGATGTTAAACTTGTGCCATGTGGTCTTGACTTTGGGCGACCTGGGTATATAAGGTTTAGGGAACAGCGTTTTCACCCTTCATTGGAAAAGACTAGGCGTTTCTATCCTCATGTTCACAATATGGATGGGTTTTTTGTTGCAAAGTTGAAAAAAATGAGCAACTCCAAGCGAAGTGCAAAACCATTAGAACCAGCAGAACAGGAGGAAGCTGCCAAGCTTGTGAATGGAGGGGAAATTACAAGTAATGGCGAGAAGCAAGATGCAGCTGGCAAAAAGCAAAATGCAAATGGCAAAAAGCAAACTGCAAATGCCAAAAAGCAAAATGTAATTGGTAATATACAAACTGCAAATGGTGAACAAGCAGCTGAAACAAAAAAGAGGAAGAAAAGGCAATTTCCATCTAGAGAGGAAATCTCAAAAGTCAGGGAAGAGAAGAGGAGAGCTTTAAGAGAAAATAAAGGAAATAAGGCAAGAAGCAAAAAGGCTAAATCTGGGGATTGA 1809 0.4151 MAYAATDNDTSDYSESEDEEMLGSNKTEGEELEDDSGSASEDSFDGDNPLANDIFQGSDDEGTPEERDDSGPGTDSNSDSDHDIEKKSRAIDEERAREEEDAEAEIKTNIQEESDEFRLPTKEELEEEALRPPDLPNLQGRIKEMVRVLSNFKALRKEGPARNDYINQLKKDLCSYYGYNEFLIGALVELFPVVELMELIEAFEKSRPLCLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYESQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNTGIIFANEMKVARLKSLTANLHRMGVSNTVVCNYDGKELPKVLGLNSVDRVLLDAPCSGTGVISKDESVKTSKNLEDIQKCSHLQKQLILSAIDMVDANSKSGGYIVYSTCSIMVAENEAVIDYALKNRDVKLVPCGLDFGRPGYIRFREQRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKRSAKPLEPAEQEEAAKLVNGGEITSNGEKQDAAGKKQNANGKKQTANAKKQNVIGNIQTANGEQAAETKKRKKRQFPSREEISKVREEKRRALRENKGNKARSKKAKSGD 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1105 602 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 171 487 IPR029063 -
Acco10g1105 602 Gene3D Vaccinia Virus protein VP39 275 594 IPR029063 -
Acco10g1105 602 FunFam Ribosomal RNA methyltransferase Nop2 166 272 - -
Acco10g1105 602 Coils Coil 96 116 - -
Acco10g1105 602 MobiDBLite consensus disorder prediction 557 587 - -
Acco10g1105 602 Gene3D Sun protein; domain 3 165 272 - -
Acco10g1105 602 MobiDBLite consensus disorder prediction 515 556 - -
Acco10g1105 602 MobiDBLite consensus disorder prediction 513 602 - -
Acco10g1105 602 MobiDBLite consensus disorder prediction 1 105 - -
Acco10g1105 602 ProSitePatterns NOL1/NOP2/sun family signature. 355 366 IPR018314 GO:0003723|GO:0008168
Acco10g1105 602 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 162 182 IPR023273 GO:0008168
Acco10g1105 602 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 218 231 IPR023273 GO:0008168
Acco10g1105 602 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 195 207 IPR023273 GO:0008168
Acco10g1105 602 PRINTS RNA (C5-cytosine) methyltransferase signature 410 426 IPR023267 GO:0001510
Acco10g1105 602 PRINTS RNA (C5-cytosine) methyltransferase signature 288 298 IPR023267 GO:0001510
Acco10g1105 602 PRINTS RNA (C5-cytosine) methyltransferase signature 470 487 IPR023267 GO:0001510
Acco10g1105 602 PRINTS RNA (C5-cytosine) methyltransferase signature 259 273 IPR023267 GO:0001510
Acco10g1105 602 PRINTS RNA (C5-cytosine) methyltransferase signature 356 368 IPR023267 GO:0001510
Acco10g1105 602 MobiDBLite consensus disorder prediction 19 33 - -
Acco10g1105 602 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 195 272 IPR031341 -
Acco10g1105 602 NCBIfam NOL1/NOP2/sun family putative RNA methylase 211 487 IPR011023 GO:0003723|GO:0006396|GO:0008757
Acco10g1105 602 Pfam 16S rRNA methyltransferase RsmB/F 276 486 IPR001678 GO:0008168
Acco10g1105 602 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 76 491 IPR023267 GO:0001510
Acco10g1105 602 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 199 488 IPR001678 GO:0008168
Acco10g1105 602 MobiDBLite consensus disorder prediction 67 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1105 Acco-ChrAcco10 24999396 25006390 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g1105 10 24999396 25006390 Acco10g1105 10 24999396 25006390 ECH