Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01245 ATGGCTCCGCCAAGGAAGAAACCCTCGAAGCCACGCAAATCCCCGAAGAACCCGAAGAGGACCGAACCCAAGCACGATTCCAGCGACGAGTCCGAGGAAGAGATGCCGCCGCAGCAACTCGAGCTCGGCGATGACGGCGCCGACTCCGATTCCGCGTCGGAGCTCTCTTCCGACGGCGATGATCCTTTGGCCGACGATTTCCTCCAAGGAAGCGATGACGAAGAGAAAGCCtcgggttcggattcaggttcgggttccggttctgattcggATGATGATGATATTGAAAAGAAGTCGAGAGCTATTGATGAAGAAAAGGCGAGAGAGGAAGAGGACGCGGAAGCCGAAATGCAGCTCAACATCAACCAAGAGTCTGATGAGTTTAGATTACCTACCAAAGAGGAACTTGAGGAAGAAACTCTGCGCCCACCTGATCTTACCAATCTCCAGAGGAGGATTAAAGAGATTGTTCGTGTTCTTTCAAATTTTAAGGCTTTGAGGCAAGAGGGGTCAACAAGGAAAGATTATGTTGAGCAGCTTAAGAAAGATATAAGTACATACTATGGCTACAATGAGTTTCTAATTGGTGCTCTAGTGGAGATGTTTCCAGTTGTTGAACTTATGGAACTGATTGAAGCCTTTGAAAAGCCACGCCCTGTATGTCTGAGGACTAACACATTGAAGACACGCAGACGGGATTTGGCTGATGTTCTGATAAATAGGGGAGTAAATTTGGATCCTTTAAGCAAATGGTCAAAGGTTGGACTTGTTGTGTATGATTCTCAAGTGCCAATTGGTGCTACTCCTGAGTATATGGCTGGTTTCTACATGCTACAAAGTGCAAGCTCTTTTCTGCCTGTGATGGCCTTAGCTCCTCAAGAGAAGGAACGAGTTGTTGATATGGCTGCTGCACCTGGTGGTAAAACAACTTACATTGCTGCACTAATGAAAAATACTGGAATAATTTTTGCAAATGAAATGAAGGTACCTAGGCTTAAGTCACTGACTGCAAATCTGCATAGACTGGGTGTATCTAACACTGTAGTTTGTAACTATGATGGAAAGGAGCTTCCAAAGGTTTTAGGTGTCAATGCCGTTGATAGAGTCTTGTTGGATGCCCCTTGCAGTGGAACTGGGGTTATATCCAAAGACGAGTCTGTTAAAACTTCTAAAAGTCTGGAAGATATACAGAAATGTGCACATGTACAGAAGGAGCTCATTCTTGCCGCAATTGACATGGTGGATGCTAATTCAAAATCTGGGGGATACGTAGTTTATTCTACATGCTCAATCATGGTTGCTGAGAATGAAGCAGTTATTGACTATGCACTCAAAAAGAGGGATGTTAAACTGGTTCCTTGTGGACTTGATTTTGGGCGTCCAGGGTTTATAAGGTTTAGGGAACAACGTTTTCACCCTTCTTTAGAAAAGACAAGGCGTTTCTATCCTCACGTGCACAATATGGATGGGTTTTTTGTTGCAAAGTTGAAAAAAATGAGCAGCTCAAAGCCTGGTGCAAAACCATCAGAAACAGCCGAGGAAGAAGAAACTACTACGTCAGTGAAGGAAAAGGAGAAATCAACTGATGGCATAAAAGAAAATGGAAATGTATCTTCTGAACCCGAATCCAAAAAGATGAAGAAAAGGAAATTCCCATCAAAACCAAGTAATGGTTTAAAAGAAAAAGGCAAAGAATCTTCTGAATCTGAACCTAAAAAGAGGATGAAAAGGCAATTTCCATCTAAGGAAGAGATTTCGAAAGCAAGGGAGGAGAAGAGAAATGCTTTAAGAGAAAAAAAGAGAAAAGGTAGCAAAAAACAACAGAAGCAAAAATGA 1836 0.4188 MAPPRKKPSKPRKSPKNPKRTEPKHDSSDESEEEMPPQQLELGDDGADSDSASELSSDGDDPLADDFLQGSDDEEKASGSDSGSGSGSDSDDDDIEKKSRAIDEEKAREEEDAEAEMQLNINQESDEFRLPTKEELEEETLRPPDLTNLQRRIKEIVRVLSNFKALRQEGSTRKDYVEQLKKDISTYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPVCLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGIIFANEMKVPRLKSLTANLHRLGVSNTVVCNYDGKELPKVLGVNAVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHVQKELILAAIDMVDANSKSGGYVVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREQRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSSSKPGAKPSETAEEEETTTSVKEKEKSTDGIKENGNVSSEPESKKMKKRKFPSKPSNGLKEKGKESSESEPKKRMKRQFPSKEEISKAREEKRNALREKKRKGSKKQQKQK 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01245 611 Gene3D Vaccinia Virus protein VP39 286 610 IPR029063 -
Cca09g01245 611 Coils Coil 582 611 - -
Cca09g01245 611 Pfam 16S rRNA methyltransferase RsmB/F 287 497 IPR001678 GO:0008168
Cca09g01245 611 MobiDBLite consensus disorder prediction 1 143 - -
Cca09g01245 611 PANTHER BNACNNG49010D PROTEIN 18 578 - -
Cca09g01245 611 ProSitePatterns NOL1/NOP2/sun family signature. 366 377 IPR018314 GO:0003723|GO:0008168
Cca09g01245 611 MobiDBLite consensus disorder prediction 90 115 - -
Cca09g01245 611 Coils Coil 107 127 - -
Cca09g01245 611 MobiDBLite consensus disorder prediction 127 143 - -
Cca09g01245 611 MobiDBLite consensus disorder prediction 508 531 - -
Cca09g01245 611 MobiDBLite consensus disorder prediction 501 611 - -
Cca09g01245 611 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 206 283 IPR031341 -
Cca09g01245 611 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 222 498 IPR011023 GO:0003723|GO:0006396|GO:0008757
Cca09g01245 611 Gene3D Sun protein; domain 3 176 283 - -
Cca09g01245 611 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 173 193 IPR023273 GO:0008168
Cca09g01245 611 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 206 218 IPR023273 GO:0008168
Cca09g01245 611 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 229 242 IPR023273 GO:0008168
Cca09g01245 611 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 182 498 IPR029063 -
Cca09g01245 611 PRINTS RNA (C5-cytosine) methyltransferase signature 270 284 IPR023267 GO:0001510
Cca09g01245 611 PRINTS RNA (C5-cytosine) methyltransferase signature 299 309 IPR023267 GO:0001510
Cca09g01245 611 PRINTS RNA (C5-cytosine) methyltransferase signature 367 379 IPR023267 GO:0001510
Cca09g01245 611 PRINTS RNA (C5-cytosine) methyltransferase signature 421 437 IPR023267 GO:0001510
Cca09g01245 611 PRINTS RNA (C5-cytosine) methyltransferase signature 481 498 IPR023267 GO:0001510
Cca09g01245 611 MobiDBLite consensus disorder prediction 554 597 - -
Cca09g01245 611 MobiDBLite consensus disorder prediction 15 32 - -
Cca09g01245 611 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 210 499 IPR001678 GO:0008168
Cca09g01245 611 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 18 578 IPR023267 GO:0001510
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01245 Cca-Chr9 34710664 34716968 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01245 K14835 - gmx:100789776 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01245 09 34710664 34716968 Cca09g01245 09 34710664 34716968 ECH