Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02555 ATGGCTCCGGCACTGAAGAAGAAACCTTCGAAGCCACTCAAAGCTCCGAAGAACCCTTCGAAGCCACTCAAAGCTCCGAAGAACCCAAAGAAGGCCAAGCTTCTCACCCCCAAAGACGATCCTAGCTCCGAATCCGAAGAAGAAACACCACAACAACAACCCGAACTGTTAGACGATGGAGACTACGACGTTTCCGGTTCCGCTTCGGAGTTATCTTCCGATGGTGACGATGATCCATTAGTCGATGATTTCCTCCAAGGAAGCGATGACGAAGAGAAAGCCTCTGGTTCGGAGTCAGGTTCGGGGTTGGATTCTGGTTCGGATTCTGATTCGGATGATGATGATATTGAGAAGAAGTCGAGAGCTATTGATGAAGAAAGGGAGAGAGAAAAAGAGGAAGCTGAAGCTGAAATGCAGCTCAACATCAAAGAAGAGTCTGATGAGTTCAGATTACCAACCAAAGAGGAACTTGAGGAAGAGGCTCTGCGCCCACCTGATCTTCCCAATCTTCAGAGGAGGATTAAAGAGATTGTTCGCGTTCTTTCAAATTTTAAGGCCTTGAAGCAAGAGGGGTCGGCAAGGAAGGATTACGTTGAGCAGCTTAAGACTGATATACGTTCGTATTATGGCTACAATGAGTTTCTAATTGGTGCTTTAGTGGAGATTTTTCCAGTTGTTGAACTCATGGAACTGATTGAAGCCTTTGAAAAGCCTCGCCCTATATGTCTGAGGACTAACACCTTAAAGACACGCAGACGGGATTTGGCAGATGTTTTGATAAATAGAGGAGTAAATCTGGATCCTTTAAGCAAATGGTCAAAAGTTGGACTTGTTGTGTATGATTCTCAAGTACCAATTGGTGCCACTCCAGAGTATATGGCAGGTTTCTACATGCTTCAAAGTGCAAGCTCTTTTCTGCCTGTGATGGCATTGGCTCCTCAAGAAAAGGAACGGGTTGTGGATATGGCGGCTGCACCTGGTGGTAAAACAACTTATATTGCTGCTCTAATGAAGAACACTGGTATAATTTTTGCAAATGAAATGAAGGTACCACGGCTTAAGTCACTGACTGCAAATTTGCATCGAATGGGTGTATCAAATACTGTTGTCTGTAACTATGATGGAAAGGAGCTTCCAAAGGTTTTAGGCCTCAATGCTGTTGATAGGGTATTATTGGATGCCCCTTGCAGTGGAACTGGGGTTATATCCAAAGATGAATCTGTTAAAAGCTCTAAAAGTGCTGAAGATATTCAGAAATGTGCTCACGTACAGAAGGAGCTCATTCTTGCTGCAATAGACATGGTGGATGCTAATTCAAAATCTGGGGGTTACATTGTATATTCCACGTGCTCAATCATGGTTGCTGAGAATGAAGCAGTTATTGATTATGCACTTAAAAAGAGGGATGTTAAGCTGGTTCCTTGTGGACTTGACTTTGGGCGTCCTGGGTTTATAAGGTTTAGGGAACAACGTTTTCACCCTTCTTTAGAAAAGACGAGACGTTTCTATCCTCATGTGCACAATATGGATGGTTTTTTTGTTGCAAAGTTGAAAAAAATGAGCAGCTCAAAGCCAGGTGCAAAACCATCAGAAACATCTGAAAAAGAGGAAGAAGATACCAAGCTTGTGAAGGAAAAGGATAAACCAAGCAATGGCGTAAAAGAAAATGGCAAACAATCATCTGAATCTGAATCCAAAAAGGGGAAGAAAAGGAAATTCCCATCAAAACCAAGTAATGGCGTAAAAGCAAATGGCAAAGAATCTTCTGAATCTGAACCCAACAAGAGGAAGAAAAGGCAATTTCCATCTAAAGAGGATATTTCAAATGCCAGGGAGGAGAAGAGACGCGCTTTAAGAGAAAACAAGAAAAAAGGTGGTAAGAAACAGAGCCGAAAATCACCAAAGACCAGTGGCAATACACAGAAGCAGTGA 1932 0.4275 MAPALKKKPSKPLKAPKNPSKPLKAPKNPKKAKLLTPKDDPSSESEEETPQQQPELLDDGDYDVSGSASELSSDGDDDPLVDDFLQGSDDEEKASGSESGSGLDSGSDSDSDDDDIEKKSRAIDEEREREKEEAEAEMQLNIKEESDEFRLPTKEELEEEALRPPDLPNLQRRIKEIVRVLSNFKALKQEGSARKDYVEQLKTDIRSYYGYNEFLIGALVEIFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGIIFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKELPKVLGLNAVDRVLLDAPCSGTGVISKDESVKSSKSAEDIQKCAHVQKELILAAIDMVDANSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREQRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSSSKPGAKPSETSEKEEEDTKLVKEKDKPSNGVKENGKQSSESESKKGKKRKFPSKPSNGVKANGKESSESEPNKRKKRQFPSKEDISNAREEKRRALRENKKKGGKKQSRKSPKTSGNTQKQ* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02555 643 MobiDBLite consensus disorder prediction 588 619 - -
Rops11g02555 643 MobiDBLite consensus disorder prediction 142 161 - -
Rops11g02555 643 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 227 304 IPR031341 -
Rops11g02555 643 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 205 519 IPR029063 -
Rops11g02555 643 PRINTS RNA (C5-cytosine) methyltransferase signature 291 305 IPR023267 GO:0001510
Rops11g02555 643 PRINTS RNA (C5-cytosine) methyltransferase signature 320 330 IPR023267 GO:0001510
Rops11g02555 643 PRINTS RNA (C5-cytosine) methyltransferase signature 388 400 IPR023267 GO:0001510
Rops11g02555 643 PRINTS RNA (C5-cytosine) methyltransferase signature 442 458 IPR023267 GO:0001510
Rops11g02555 643 PRINTS RNA (C5-cytosine) methyltransferase signature 502 519 IPR023267 GO:0001510
Rops11g02555 643 Coils Coil 604 624 - -
Rops11g02555 643 Gene3D Vaccinia Virus protein VP39 307 607 IPR029063 -
Rops11g02555 643 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 307 631 - -
Rops11g02555 643 NCBIfam NOL1/NOP2/sun family putative RNA methylase 243 519 IPR011023 GO:0003723|GO:0006396|GO:0008757
Rops11g02555 643 MobiDBLite consensus disorder prediction 1 117 - -
Rops11g02555 643 Gene3D Sun protein; domain 3 197 304 - -
Rops11g02555 643 Pfam 16S rRNA methyltransferase RsmB/F 308 518 IPR001678 GO:0008168
Rops11g02555 643 MobiDBLite consensus disorder prediction 529 569 - -
Rops11g02555 643 ProSitePatterns NOL1/NOP2/sun family signature. 387 398 IPR018314 GO:0003723|GO:0008168
Rops11g02555 643 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 227 239 IPR023273 GO:0008168
Rops11g02555 643 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 194 214 IPR023273 GO:0008168
Rops11g02555 643 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 250 263 IPR023273 GO:0008168
Rops11g02555 643 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 110 522 IPR023267 GO:0001510
Rops11g02555 643 FunFam Ribosomal RNA methyltransferase Nop2 198 304 - -
Rops11g02555 643 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 231 520 IPR001678 GO:0008168
Rops11g02555 643 MobiDBLite consensus disorder prediction 521 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02555 Rops-Chr11 43578124 43585671 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02555 K14835 - gmx:100807160 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02555 11 43578124 43585671 Rops11g02555 11 43578124 43585671 ECH