Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01153 ATGGCTCCAGTAACTAGGAAAAAACCTTCCAAGCCACTCAAAGTTCAGAAAGCCCCCAAAAAAGTACAGATTGTTTCCGTCAAAGATGATTCCACCTCCGAATCCGAAGAAGAAGAAGCACCACCACAACAGCTCGAACTCGGAAACGACGCCGGCGACAACGATTCTGCTTCCGAATTATCTTCCGATGATGATGATCCGTTAGCTGATGATTTCCTCCAAGGAAGCGATGATGAAGACGAAGAGAAAGCCTCAGGttcggattctggatcgggtttggattctgattcggatGATGACGATGGTGTTGATATTGAGAAGAAGTCGAAAGCTATTGATGAAGAAAGGGAGAGAGAAAAAGAGGATGCGGAAGCTGAAATGCAAACCAACATCCAGGAAGAGTCTGATGAGTTTAGACTACCAACCAAACAGGAACTTGAGGAAGAGGCTTTGCGTCCACCTGATCTTTCCAATCTCCAGAGGAGGATTAAAGAGATTATCCGCGTTCTTTCCAATTTTAAGACCTTGAGGCAAGATGAGTCAACAAGGAAGGATTATGTTAATCAGCTTAAGATCGATATATCTTCATACTATGGCTACAATAAGTTTCTAATTGGTGCCTTAGTGGAGATGTTTCCAGTTGTTGAACTCATGGAACTGATTGAAGCCTTTGAAAAGCCTCGCCCAATATGTCTGAGGACAAACACTTTAAAGACACGGAGACGGGATTTGGCTGATGTCTTGATAAACAGAGGAGTAAATCTGGATCCTCTAAGCAAATGGTCAAAAGTTGGACTTGTCGTGTATGATTCTCAAGTACCAATTGGTGCCACTCCAGAGTACATGGCTGGTTTTTACATGCTTCAAAGTGCTAGTTCATTTCTGCCTGTGATGGCCTTGGCTCCTCAAGAAAAGGAGCGGATTGTTGATATGGCGGCCGCACCAGGTGGTAAAACAACTTATATTGCTGCTCTTATGAAGAATACTGGAATAATTTTTGCAAATGAAATTAAGGCACCTCGTCTAAAGTCGTTGACAGCAAATTTGCATCGGATGGGTGTATCAAACACTGTAGTCTGCAACTATGATGGGAAAGAGCTTCCAAAGGTTATGGGTTTCAATGCTGTTGATAGGGTATTATTGGATGCTCCTTGCAGTGGAACTGGGGTTATATCTAAGGACGAGTCTGTTAAAACCTCTAAAAACTTGGAAGATATAAAGAAGTGTGCCCATCTACAGAAGGAGCTCCTTCTCGCAGCAATTGACATGGTAGATGCTAATTCAAAATCTGGGGGATACATTGTATATTCTACATGTTCAATCATGGTTGCTGAGGACGAAGCAGTTATTGATTATGCACTAAAAAAGAGGGATGTTAAGCTAGTTCCTTGTGGACTCGACTTTGGACGTCCAGGGTTTACAAAGTTTAGGGAACAGCGTTTTCACCCTTCATTAGATAAGACTAGACGATTCTATCCTCACGTACACAATATGGACGGGTTTTTTGTTGCAAAGTTGAAAAAAATGAGCAATTCAAAACCTGGTGCCAAACCATCAGAAACATCTGAGAAGGACGAAGAAGAAACCAAGCTTGTGAATGACGATGATAAACCAAGTAATGACATTAAAGAAAATGGAAAACAATCTTCAGCATCTGATTCCAAAAAGAGGAAGAAAGAGAAATTGCCCTCAAAACCAAGTAATAATGATGTAAAAGCTAATGTCAAAGAAGCTTCTGAACCTGAATCCAAGAAGAGGAAGAAAAGGCAACTTCCATCTAGAGAAGAGATTTCAAAAACCAGAGAGGAAAAGAGACTCGCTTTAATAGAAAAGAAGAGAAAAATTGCTAAGCAACAGAGCAGAAGAAGATGA 1872 0.4033 MAPVTRKKPSKPLKVQKAPKKVQIVSVKDDSTSESEEEEAPPQQLELGNDAGDNDSASELSSDDDDPLADDFLQGSDDEDEEKASGSDSGSGLDSDSDDDDGVDIEKKSKAIDEEREREKEDAEAEMQTNIQEESDEFRLPTKQELEEEALRPPDLSNLQRRIKEIIRVLSNFKTLRQDESTRKDYVNQLKIDISSYYGYNKFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNTGIIFANEIKAPRLKSLTANLHRMGVSNTVVCNYDGKELPKVMGFNAVDRVLLDAPCSGTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVDANSKSGGYIVYSTCSIMVAEDEAVIDYALKKRDVKLVPCGLDFGRPGFTKFREQRFHPSLDKTRRFYPHVHNMDGFFVAKLKKMSNSKPGAKPSETSEKDEEETKLVNDDDKPSNDIKENGKQSSASDSKKRKKEKLPSKPSNNDVKANVKEASEPESKKRKKRQLPSREEISKTREEKRLALIEKKRKIAKQQSRRR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01153 623 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 183 203 IPR023273 GO:0008168
Car05g01153 623 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 216 228 IPR023273 GO:0008168
Car05g01153 623 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 239 252 IPR023273 GO:0008168
Car05g01153 623 MobiDBLite consensus disorder prediction 509 603 - -
Car05g01153 623 MobiDBLite consensus disorder prediction 518 566 - -
Car05g01153 623 MobiDBLite consensus disorder prediction 575 603 - -
Car05g01153 623 PANTHER BNACNNG49010D PROTEIN 10 595 - -
Car05g01153 623 Pfam 16S rRNA methyltransferase RsmB/F 297 507 IPR001678 GO:0008168
Car05g01153 623 ProSitePatterns NOL1/NOP2/sun family signature. 376 387 IPR018314 GO:0003723|GO:0008168
Car05g01153 623 MobiDBLite consensus disorder prediction 57 84 - -
Car05g01153 623 MobiDBLite consensus disorder prediction 102 140 - -
Car05g01153 623 Gene3D Vaccinia Virus protein VP39 296 621 IPR029063 -
Car05g01153 623 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 220 509 IPR001678 GO:0008168
Car05g01153 623 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 10 595 IPR023267 GO:0001510
Car05g01153 623 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 193 508 IPR029063 -
Car05g01153 623 PRINTS RNA (C5-cytosine) methyltransferase signature 280 294 IPR023267 GO:0001510
Car05g01153 623 PRINTS RNA (C5-cytosine) methyltransferase signature 309 319 IPR023267 GO:0001510
Car05g01153 623 PRINTS RNA (C5-cytosine) methyltransferase signature 377 389 IPR023267 GO:0001510
Car05g01153 623 PRINTS RNA (C5-cytosine) methyltransferase signature 431 447 IPR023267 GO:0001510
Car05g01153 623 PRINTS RNA (C5-cytosine) methyltransferase signature 491 508 IPR023267 GO:0001510
Car05g01153 623 Coils Coil 599 619 - -
Car05g01153 623 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 216 293 IPR031341 -
Car05g01153 623 MobiDBLite consensus disorder prediction 1 140 - -
Car05g01153 623 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 232 508 IPR011023 GO:0003723|GO:0006396|GO:0008757
Car05g01153 623 Gene3D Sun protein; domain 3 186 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01153 Car-Chr5 54159617 54166386 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01153 K14835 - gmx:100807160 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01153 05 54159617 54166386 Car05g01153 05 54159617 54166386 ECH