Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03082 ATGGCTCCCGCAAGGAAGAAACCTTCTAAGCCAAGCAAATCGCCGAAGAACCCTAGGAAGACCCATCCCAAGCACGATTCTACCTCCGAATCCGAAGAAGACACCCCGCCGCAACTGCAACCGGAGCAACTCGAGCTCGGCGACGACAACTCCGATTCCGCGTCGGAGCTCTCCTCCGATGGCGACGATCCGTTAGCCGATGATTTCCTCCAAGGAACCGATGACGACGAAGAAAAAGGCtcaggttcggagtcaggtttggagtcaggttCGGATTCCGATTCGGATGATGGTGATATTGAAAAGAAGTCGAGAGCTATTGACGAAGAGAAGGCGAAAGAGGAAGAGGACGCGGATGCCGAAATGCAGCTCAACATCAACCAAGAGTCTGATGAGTTCAGATTGCCTACCAAAGAGGAGCTTGATGAGGAGGCTCTCCGCCCACCTGATCTTTCCAATCTCCAGAGGAGAACCAAAGAGATTGTTCGTGTTCTTTCAAATTTTAAAGCTTTGAGGCAAGATGGGTCAACGAGAAAAGAGTATGTTGAACAGCTTAAGAAAGATTTATGTACCTACTATGGCTACAATGAGTTCCTAATTGGTGCTCTAGTGGAGATGTTTCCAGTTGTTGAACTTATGGAACTGATTGAAGCCTTTGAAAAGCCACGTCCTATATGTCTGAGGACTAATACATTGAAGACACGCAGACGGGATTTGGCGGATGTTTTGATAAATAGGGGAGTAAATTTGGATCCTCTAAGCAAATGGTCAAAGGTTGGACTTGTTGTGTATGATTCTCAAGTGCCTATTGGTGCCACTCCTGAGTACATGGCTGGTTTCTACATGCTACAAAGTGCAAGCTCTTTTCTGCCCGTTATGGCTTTGGCTCCTCAAGAGAAGGAACGAGTTGTTGATATGGCAGCTGCACCTGGTGGTAAAACAACTTACATTGCTGCTCTAATGAAGAATACTGGAATAATTTTTGCAAATGAAATGAAGGTACCACGACTTAAGTCACTGACTGCAAATTTGCATCGCATGGGTGTATCTAACACTGTAGTGTGTAACTATGATGGAAAGGAGCTTCCAAAGGTTTTAGGTGTAAATGCTGTTGATAGAGTATTATTGGATGCCCCTTGCAGTGGAACTGGGGTTATTTCCAAAGATGAGTCTGTTAAAACCTCTAAAAGTCTGGAAGATATACAGAAATGTGCGCATCTACAGAAGGAGCTCATTCTTGCAGCAATTGACATGGTGGATGCTAATTCAAAGTCTGGGGGATATGTTGTTTATTCTACATGCTCAATTATGGTTGCCGAGAATGAGTCAGTTATTGACTATGCACTCAAAAAGCGGGATGTTAAATTGGTTCCTTGTGGACTTGATTTTGGGCGTCCAGGATTTACAAAGTTTAGGGAACAACGTTTTCACCCTTCTTTAGAAAAGACAAGGCGTTTCTATCCTCACGTACAGAATATGGATGGTTTTTTTGTTGCAAAGTTGAAAAAAATGAGCAGCTCAAAGCCTGGTGCAATATCATCAGAAACAGCCGAGAAAGAAGACACTACCTCGTTCGTGGAGGAAAAGGAGAAATCAAGTGATGGCATAAAAGAAAATGGCAATGTATCTTCTGAATCAGAAAAGGGGAAGAAAAGAAAGTTCCCCTCAAAACCAAGTAACGGTCTAAAATCAAATGGCAAAGAATCTTCAGAATCTGAACCCAAAAAGAGGAATAAAAGGCAATTTCCATCTAAGGAAGAGATTTCAAAAGCCAGGGAGGATAAGAGAAATGCTTTAAGAGAAAAAAGGAGAAAAGGTGGCAAACAACAGAAGAACAAAAAATGA 1845 0.4233 MAPARKKPSKPSKSPKNPRKTHPKHDSTSESEEDTPPQLQPEQLELGDDNSDSASELSSDGDDPLADDFLQGTDDDEEKGSGSESGLESGSDSDSDDGDIEKKSRAIDEEKAKEEEDADAEMQLNINQESDEFRLPTKEELDEEALRPPDLSNLQRRTKEIVRVLSNFKALRQDGSTRKEYVEQLKKDLCTYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGIIFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKELPKVLGVNAVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKELILAAIDMVDANSKSGGYVVYSTCSIMVAENESVIDYALKKRDVKLVPCGLDFGRPGFTKFREQRFHPSLEKTRRFYPHVQNMDGFFVAKLKKMSSSKPGAISSETAEKEDTTSFVEEKEKSSDGIKENGNVSSESEKGKKRKFPSKPSNGLKSNGKESSESEPKKRNKRQFPSKEEISKAREDKRNALREKRRKGGKQQKNKK 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03082 614 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 215 504 IPR001678 GO:0008168
Gma08g03082 614 MobiDBLite consensus disorder prediction 1 20 - -
Gma08g03082 614 MobiDBLite consensus disorder prediction 508 614 - -
Gma08g03082 614 Gene3D Sun protein; domain 3 181 288 - -
Gma08g03082 614 Coils Coil 585 605 - -
Gma08g03082 614 Pfam 16S rRNA methyltransferase RsmB/F 292 502 IPR001678 GO:0008168
Gma08g03082 614 MobiDBLite consensus disorder prediction 96 120 - -
Gma08g03082 614 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 227 503 IPR011023 GO:0003723|GO:0006396|GO:0008757
Gma08g03082 614 MobiDBLite consensus disorder prediction 1 120 - -
Gma08g03082 614 PRINTS RNA (C5-cytosine) methyltransferase signature 275 289 IPR023267 GO:0001510
Gma08g03082 614 PRINTS RNA (C5-cytosine) methyltransferase signature 304 314 IPR023267 GO:0001510
Gma08g03082 614 PRINTS RNA (C5-cytosine) methyltransferase signature 372 384 IPR023267 GO:0001510
Gma08g03082 614 PRINTS RNA (C5-cytosine) methyltransferase signature 426 442 IPR023267 GO:0001510
Gma08g03082 614 PRINTS RNA (C5-cytosine) methyltransferase signature 486 503 IPR023267 GO:0001510
Gma08g03082 614 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 178 198 IPR023273 GO:0008168
Gma08g03082 614 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 211 223 IPR023273 GO:0008168
Gma08g03082 614 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 234 247 IPR023273 GO:0008168
Gma08g03082 614 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 187 503 IPR029063 -
Gma08g03082 614 MobiDBLite consensus disorder prediction 33 58 - -
Gma08g03082 614 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 211 288 IPR031341 -
Gma08g03082 614 Gene3D Vaccinia Virus protein VP39 291 603 IPR029063 -
Gma08g03082 614 ProSitePatterns NOL1/NOP2/sun family signature. 371 382 IPR018314 GO:0003723|GO:0008168
Gma08g03082 614 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 11 581 IPR023267 GO:0001510
Gma08g03082 614 MobiDBLite consensus disorder prediction 568 600 - -
Gma08g03082 614 PANTHER BNACNNG49010D PROTEIN 11 581 - -
Gma08g03082 614 MobiDBLite consensus disorder prediction 520 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03082 Gma-Chr8 47521897 47528579 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03082 K14835 - gmx:100789776 1114.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g03082 08 47521897 47528579 Gma08g03082 08 47521897 47528579 ECH
Gma18g00694 18 7134504 7140566 Gma08g03082 08 47521897 47528579 GST