Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1310 ATGGCTCCCGCAGCAACTGTGGACGACATTTCCGATAATTCTGAAAGGGAAGACGACGAGATGGTAGGACCCGGCGAAGTAGAAGGAGAAGAGCTGGGAGACGATTCTGGGTCTGCTTCTGAAGATTCTTTTGACGGCGATAATCCTCTCGCGAATGATATCTTCCAAGATAGTGGCGATGAAGGTACTGCAGAGGAAAAGGATGACTCAGGTTTGGGGACGGACTCAGATTCAGATTCTGATAGTGATATTGAGAAAAAGTCAAGAGCTATTGATGAAGAAAGGGCGCGAGAAGAAGAAGATGCAGAAGCGGAAATGAAGCTCAATATTCAAGGAGAATCTGATGAGTTTAGGCTGCCGACCAAGGAGGAACTCGAGGAAGAGGCTCTACGTCCACCTGATCTTTCAAATCTTCAGAGAAGAATCAAAGAGATGGTTCGTGTTCTTTCCAATTTTAAGGCTTTGAGGGAAGAAGGGTCAACAAGGAAGAATTACACTGACCAGCTTAAGAAAGATATATGTTCATATTATGGGTATAACGAGTTTCTTGTTGGGGCTTTGGTTGAGTTGTTTCCAGTTGTTGAACTGATGGAATTGATTGAAGCCTTTGAAAAGCCACGGCCCATATGTCTAAGGACCAACACTTTGAAGACACGCAGACGGGATTTGGCAGATGTTTTAATAAACAGAGGAGTAAATCTAGATCCTTTAAGTAAATGGTCAAAAGTTGGCCTTGTTGTGTATGATTCTCAAGTACCAATTGGTGCCACTCCTGAGTATATGGCTGGTTTCTATATGCTTCAAAGTGCTAGCTCTTTTCTGCCTGTAATGGCCTTGGCTCCTCAAGAGAAGGAACGGGTTGTTGATATGGCAGCTGCACCTGGTGGTAAAACAACTTATATTGCTGCTCTTATGAAGAATACTGGAATTGTTTTTGCAAATGAAATGAAGGTGCCCCGGCTTAAATCACTTACTGCAAATTTGCATCGTATGGGAGTGTCAAACACTGTAGTCTGTAACTATGACGGAAAGGAGCTCCCCAAGGTCTTGGGTCTCAATTCTGTTGATAGGGTGTTATTGGATGCCCCTTGCAGTGGTACTGGGGTAAGATACTGTTTAAAATACGTTATATCAAAGGATGAGTCTGTAAAAACTTCTAAAAATCTCGAAGATATAAAGAAATGTACTCATCTGCAAAAGCAATTGATTCTTGCTGCTATTGACATGGTGGATGCTAATTCAAAATCTGGGGGTTATATTGTTTATTCGACATGCTCCATCATGGTGGCAGAGAATGAAGCAGTCATTGACTATGCTCTCAAAAAGAGGGATGTTAAACTTGTGATTTGTGGTCTTGACTTTGGGCGTCCTGGGTTTATAAAGTTTAGGGAACATCGTTTCCACCCTTCATTGGAAAAGACAAGGCGTTTCTATCCCCATGTGCACAATATGGATGGATTTTTTGTTGCAAAGTTGAAAAAAATGAGCAACTCAAAGGCAAGTGCAAAACCATTAGAACTGGCAGAAGAGGAGGAAGGCGCCAAGCTTGTGAATGAAAAGGAGATTACAAGTAATGGCGAGAAGCAAGATGCAGATGGCAAAAAGCAAAATGCAAATGGAAAAAAGCAAACCGCACATGCCAAAAAGCAAAATCCAAATGGTAAAATACAAACTGCAAATGGCGAACAAGCATCTGAATCCAAAAGGAGGAAGAAAAGGCAATTTTCATCTATAGAGGAAATTTCGAAAGCAAGGGAAGAGAAGAGGAGAGCTTTAAGAGAAGAAAGGAATGAAGGCAGGAAGAAAAAAGGCTAA 1815 0.4176 MAPAATVDDISDNSEREDDEMVGPGEVEGEELGDDSGSASEDSFDGDNPLANDIFQDSGDEGTAEEKDDSGLGTDSDSDSDSDIEKKSRAIDEERAREEEDAEAEMKLNIQGESDEFRLPTKEELEEEALRPPDLSNLQRRIKEMVRVLSNFKALREEGSTRKNYTDQLKKDICSYYGYNEFLVGALVELFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGIVFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKELPKVLGLNSVDRVLLDAPCSGTGVRYCLKYVISKDESVKTSKNLEDIKKCTHLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVICGLDFGRPGFIKFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKASAKPLELAEEEEGAKLVNEKEITSNGEKQDADGKKQNANGKKQTAHAKKQNPNGKIQTANGEQASESKRRKKRQFSSIEEISKAREEKRRALREERNEGRKKKG 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1310 604 MobiDBLite consensus disorder prediction 1 104 - -
Lele01g1310 604 ProSitePatterns NOL1/NOP2/sun family signature. 355 366 IPR018314 GO:0003723|GO:0008168
Lele01g1310 604 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 171 494 IPR029063 -
Lele01g1310 604 Coils Coil 135 155 - -
Lele01g1310 604 MobiDBLite consensus disorder prediction 65 104 - -
Lele01g1310 604 PRINTS RNA (C5-cytosine) methyltransferase signature 417 433 IPR023267 GO:0001510
Lele01g1310 604 PRINTS RNA (C5-cytosine) methyltransferase signature 288 298 IPR023267 GO:0001510
Lele01g1310 604 PRINTS RNA (C5-cytosine) methyltransferase signature 356 368 IPR023267 GO:0001510
Lele01g1310 604 PRINTS RNA (C5-cytosine) methyltransferase signature 259 273 IPR023267 GO:0001510
Lele01g1310 604 PRINTS RNA (C5-cytosine) methyltransferase signature 477 494 IPR023267 GO:0001510
Lele01g1310 604 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 76 498 IPR023267 GO:0001510
Lele01g1310 604 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 195 272 IPR031341 -
Lele01g1310 604 Gene3D Sun protein; domain 3 165 272 - -
Lele01g1310 604 Gene3D Vaccinia Virus protein VP39 275 596 IPR029063 -
Lele01g1310 604 MobiDBLite consensus disorder prediction 504 539 - -
Lele01g1310 604 MobiDBLite consensus disorder prediction 564 604 - -
Lele01g1310 604 FunFam Ribosomal RNA methyltransferase Nop2 166 272 - -
Lele01g1310 604 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 195 207 IPR023273 GO:0008168
Lele01g1310 604 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 218 231 IPR023273 GO:0008168
Lele01g1310 604 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 162 182 IPR023273 GO:0008168
Lele01g1310 604 MobiDBLite consensus disorder prediction 503 604 - -
Lele01g1310 604 MobiDBLite consensus disorder prediction 540 563 - -
Lele01g1310 604 Pfam 16S rRNA methyltransferase RsmB/F 276 493 IPR001678 GO:0008168
Lele01g1310 604 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 211 494 IPR011023 GO:0003723|GO:0006396|GO:0008757
Lele01g1310 604 MobiDBLite consensus disorder prediction 12 41 - -
Lele01g1310 604 Coils Coil 578 598 - -
Lele01g1310 604 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 199 495 IPR001678 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1310 Lele-ChrLele01 7989768 7995406 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1310 01 7989768 7995406 Lele01g1310 01 7989768 7995406 ECH
Lele01g1310 01 7989768 7995406 Lele04g1572 04 20586445 20591932 hybridization