LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi19g0808	ATGGCAGAACCTCAAGGTGACAATCAGCTGAAGCCCCCGGAGATGCAACACTTGGACATTGAAGTTACTGTTGCTTGGCTATGGATGGGCTGGCCTGTTCAGAAAATACCTAGTGGACTCCCCCCTATATGTGGTGGCCAGCAAATATGGTCCAAGTCTCTCTCTTCAGGACCTTGCATGAAAAAGAAAAAAAGCAAAGGAGGAGTCACAAGGCTGCAATTTTTTGTCATAGTGTTCATTTCAAGCTTTGCCTACTACCTGGTCCCAAGCTACTTGTTTCCTACCATCAGTGCCATCTCCATTGTTTGTTTGATTTGGAAGAACTCCATCACTGCCCAGCAGATTGGTTCAGGCCTCAGTGGCATGGGCCTTGGATCTTTTGGGATTGACTGGTCCACAGTTGCTAGTTTCTTAGGAAGTCCTTTAGCCACCCCTGGATTTGCCATCATTAATATTCTTGCTGGGTTTGTCCTTATTATGTATGTTATACTTCCCATTTCCTACTATAGAAATGCATCTCATGCCAAGAGATTCCCCATCTCCTCACCCCACACCTTCGATTCAAATGGTCAGAAATACGTCACCAGAATTTTGGACCCAAAAACTTTCTCAATCGACCTAGCTGGATACAATGCTTATAGCAAACTTTATCTCAGTGTCTTCTTTGCATTCACATATGGGATTAGTTTTGCAACTCTAACAGCTGCTATCTCACATGTTGGGCTCTTCCATGGAAAAACAATTTGGCAAATGTGGAGTAAGACAAGGGCAGCAGTAGGAGATCAGTTTGGAGATATGCATACGAGACTGATGAAGAAGAACTATAAAATAGTCCCTCAATGGTGGTTTTTTATAATTTTGACTATACTGCTTGGCCTTGCATTCCTTGCCTGTGAAGGTTTTAACAAGCAGCTTCAACTACCTTGGTGGGGAATTCCTCCATGTTGTGCCTTGGCACTATTTTTCACCTTACCCATTGGGATAATAACAGCCACGACAAACCAGGCAAGGTTAAATGTGATCACACAGCTGATTATTGGATACGTATACCCAGGGAAGCCTCTTGAAAATGCAACTTTCAAGACCTATGGCTATATCAGCATGGTGCAGGCACTCACATTTCTCAGTGATTTCAAATTAGGTCACTACATGAAGGTCCCACCCTGA	1167	0.4353	MAEPQGDNQLKPPEMQHLDIEVTVAWLWMGWPVQKIPSGLPPICGGQQIWSKSLSSGPCMKKKKSKGGVTRLQFFVIVFISSFAYYLVPSYLFPTISAISIVCLIWKNSITAQQIGSGLSGMGLGSFGIDWSTVASFLGSPLATPGFAIINILAGFVLIMYVILPISYYRNASHAKRFPISSPHTFDSNGQKYVTRILDPKTFSIDLAGYNAYSKLYLSVFFAFTYGISFATLTAAISHVGLFHGKTIWQMWSKTRAAVGDQFGDMHTRLMKKNYKIVPQWWFFIILTILLGLAFLACEGFNKQLQLPWWGIPPCCALALFFTLPIGIITATTNQARLNVITQLIIGYVYPGKPLENATFKTYGYISMVQALTFLSDFKLGHYMKVPP*	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi19g0808	388	PANTHER	ISP4 LIKE PROTEIN	61	388	IPR004648	GO:0055085
	Vvi19g0808	388	Pfam	OPT oligopeptide transporter protein	66	388	IPR004813	GO:0035673
	Vvi19g0808	388	NCBIfam	OPT family oligopeptide transporter	81	388	IPR004813	GO:0035673

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi19g0808	Vvi-Chr19	9006071	9008545	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi19g0808	61	388	Organic Solute Cotransporters	AT4G26590	63.333	4.98e-146	430

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi19g0808	-		-	vvi:100249762	544.658