Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0620 ATGGCTCCCGCGAGGAAGAAACCTTCGAAGCAAAGCAAATCCCCGAAGAACCCTAAGAAGACCCAACCCAAGCACGATTCCAGCTCCGAATCCGAAGAAGACACGCCGTCGCAGCAGCAACCGCAGCAACTCGAACTAGGCGATGACTACTCCGATTCCGCGTCGGAGCTCTCTTCCGAAGGGGACGACCCGTTAGCCGACGATTTCCTCCAAGGAAGCGATGACGACGAAGGAAAAGCCTCCGGTTCGGACAAAGATTCTGGTTCTGATTCGGATGATGATGATATCGAAAAGAAGTCGAGAGCTATTGATGAAGAGAAGGCGAGAGAGGAAGAGGATGCGGAAGCCGAAATGCAGCTCAATATCAACCAGGAGTCTGATGAGTTCAGATTGCCGACCCCAGAGGAACTCGAGCAAGAGGCCTTGAATCCACCTGATCTTTCCAATCTCCAAAGGAGGATTAAAGAGATTGTTCGTGTTCTTTCAAATTTGAAGGTTTTGAGGCAAGATGGGGCAACGAGGAAAGATTATGTTGACCTGCTTAAGAAAGATATTTGCTCATACTATGGCTACAATGAGTTCCTAATGGGTGCTCTAGTGGAGATGTTTCCAGTTGTTGAACTTATGGAACTGATTGAAGCCTTTGAAAAGCCACGCCCTATGTGTCTAAGGACTAACACATTGAAGACACGCAGAAGGGATTTGGCTGATGTTTTGATAAATAGGGGAGTTAATTTGGATCCTTTAAGCAAATGGTCAAAGGTTGGACTTGTTGTGTATGATTCTCAAGTGCCTATTGGTGCCACTCCTGAGTATATGGCTGGTTTCTACATGCTACAAAGTGCGAGCTCTTTTCTGCCTGTCATGGCCTTGGCTCCTCAGGAGAAGGAACGAGTTGTTGATATGGCAGCTGCACCAGGTGGTAAAACAACTTACATCGCTGCTCTAATGAAGAACTCTGGAATAATTTTTGCAAATGAAATGAAGGTACCAAGGCTTAAGTCATTGACTGCAAATTTGCATCGTATGGGTGTATCCAATACTGTAGTCTGTAACTATGATGGAAAGGAGCTTCCAAAAGTTTTAGGTGTCAATGCAGTTGATAGAGTATTATTGGATGCCCCTTGCAGTGGAACTGGGGTTATATCCAAAGATGAGTCTGTTAAATCCTCTAAAAGTTTGGAAGATATACAGAAGTGTGCGCAGCTACAGAAGGAGCTTATTCTTGCGGCAATTGACATGGTGGATTCTAATTCAAAATCTGGGGGATACATTGTTTATTCTACATGCTCAATCATGGTTGCCGAGAATGAAGCAGTTATTGACTATGCGCTCAAAAAGCGGGATGTTAAACTGGTTCCATGTGGACTTGATTTTGGGCGTCCAGGGTTTATAAGGTTTAGGGAACAACGTTTTCACCCTTCTTTGGAAAAGACAAGGCGTTTCTATCCTCACGTGCAAAATATGGATGGTTTTTTTGTGGCAAAGTTGAAAAAAATGAGCAACACAAAGGCAGGTGCAAAATCATCAGAAATAGCCGAGATGGAAGAAGGTACCGTTACCACGTTGGAGAACGAGAAGGAAAAATCAAATGATGGTAAAAAAGAAAATGGCAATGCAACTCTTAAATCTGAATCCGAGAAGACGAAGAAAAGAAAGTTCCCCTCTAAACCAGTTAACGGTCTAAAAGAAAATGGCAAAGAATCTTCTGAATCTGAACCCAAAAAGAGGACTAAGAGACAATTTCCATCGAAGGAAGAGATTTCAAAAGCCAGGGAGGAGAAGAGAAATGCTTTACGAGAAGAAAAGAGAAAAGGTGTTAAACCACAGAAGCACAAAATGACCAAAGCCAGTGGCAAGAAGAGATGA 1869 0.4361 MAPARKKPSKQSKSPKNPKKTQPKHDSSSESEEDTPSQQQPQQLELGDDYSDSASELSSEGDDPLADDFLQGSDDDEGKASGSDKDSGSDSDDDDIEKKSRAIDEEKAREEEDAEAEMQLNINQESDEFRLPTPEELEQEALNPPDLSNLQRRIKEIVRVLSNLKVLRQDGATRKDYVDLLKKDICSYYGYNEFLMGALVEMFPVVELMELIEAFEKPRPMCLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKELPKVLGVNAVDRVLLDAPCSGTGVISKDESVKSSKSLEDIQKCAQLQKELILAAIDMVDSNSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREQRFHPSLEKTRRFYPHVQNMDGFFVAKLKKMSNTKAGAKSSEIAEMEEGTVTTLENEKEKSNDGKKENGNATLKSESEKTKKRKFPSKPVNGLKENGKESSESEPKKRTKRQFPSKEEISKAREEKRNALREEKRKGVKPQKHKMTKASGKKR* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0620 622 Gene3D Sun protein; domain 3 178 284 - -
Pvu6g0620 622 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 16 581 IPR023267 GO:0001510
Pvu6g0620 622 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 207 284 IPR031341 -
Pvu6g0620 622 PANTHER BNACNNG49010D PROTEIN 16 581 - -
Pvu6g0620 622 MobiDBLite consensus disorder prediction 504 622 - -
Pvu6g0620 622 Gene3D Vaccinia Virus protein VP39 287 619 IPR029063 -
Pvu6g0620 622 Coils Coil 585 605 - -
Pvu6g0620 622 Coils Coil 147 167 - -
Pvu6g0620 622 MobiDBLite consensus disorder prediction 1 18 - -
Pvu6g0620 622 ProSitePatterns NOL1/NOP2/sun family signature. 367 378 IPR018314 GO:0003723|GO:0008168
Pvu6g0620 622 MobiDBLite consensus disorder prediction 72 116 - -
Pvu6g0620 622 MobiDBLite consensus disorder prediction 520 605 - -
Pvu6g0620 622 PRINTS RNA (C5-cytosine) methyltransferase signature 271 285 IPR023267 GO:0001510
Pvu6g0620 622 PRINTS RNA (C5-cytosine) methyltransferase signature 300 310 IPR023267 GO:0001510
Pvu6g0620 622 PRINTS RNA (C5-cytosine) methyltransferase signature 368 380 IPR023267 GO:0001510
Pvu6g0620 622 PRINTS RNA (C5-cytosine) methyltransferase signature 422 438 IPR023267 GO:0001510
Pvu6g0620 622 PRINTS RNA (C5-cytosine) methyltransferase signature 482 499 IPR023267 GO:0001510
Pvu6g0620 622 Coils Coil 108 128 - -
Pvu6g0620 622 MobiDBLite consensus disorder prediction 33 58 - -
Pvu6g0620 622 MobiDBLite consensus disorder prediction 1 128 - -
Pvu6g0620 622 MobiDBLite consensus disorder prediction 606 622 - -
Pvu6g0620 622 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 211 500 IPR001678 GO:0008168
Pvu6g0620 622 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 223 499 IPR011023 GO:0003723|GO:0006396|GO:0008757
Pvu6g0620 622 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 184 499 IPR029063 -
Pvu6g0620 622 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 174 194 IPR023273 GO:0008168
Pvu6g0620 622 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 207 219 IPR023273 GO:0008168
Pvu6g0620 622 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 230 243 IPR023273 GO:0008168
Pvu6g0620 622 Pfam 16S rRNA methyltransferase RsmB/F 288 498 IPR001678 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0620 Pvu-Chr6 17599286 17605715 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0620 K14835 - gmx:100789776 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0620 6 17599286 17605715 Pvu6g0620 6 17599286 17605715 ECH