Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02600 ATGGCTGCTCCAGCACTgaataagaagaaaacttcTAAGTCACAGAAAGCTCCtccaaagaagaagcaaaagcatGAGCTTTTCACCCCTAAAGACGGAGAGTTTAATGAGACTTCAGAGCATTCAGATagtgaaaaagaagagatagtGGGTCAAGAAGGTTCTGAAGGAGATGAACCAGGATACGATTCTGGGTCTGCTGAATTTTCCTCCGATGGTGATAATCCCTTTACTGACGATTTCCTCCAAGGAAGTGATGATGAAGACGAAGCGGAAGGTTCAGCTTCTGATTCGGGTTCAGATTCTGATGAGTATCATAATATTGAAAAGAAGTCTAGAGCTATTGatgaagaaatggagaaaaggaaaaaagaagcagaggaagaaataaaactcaaCATGCAAGAAGAATCTGATGAGTTTAGACTGCCTTCCAAGgaggAGCTTGAAGAAGAGGCTCTACGCCCACCTGATCTTCCAAATCTCCAAAGGAGAATTAAAGAGATCGTTCGAgttctttcaaatttcaagtCTCTGAGGCATGAAGGTTCAACGAGGAAGGATTATATTGAGCAGCTTAAGAAGGATATATGTTCATACTACGGCTACAATGAGTTCCTAATGGGGGCCTTAGTGGAGTTGTTTCCAGTTGTTGAACTTATGGAATTAATTGAAGCCTTTGAGAAACCTCGGCCAATTTGTCTACGCACTAACACTTTAAAGACACGCAGACGGGACTTGGCGGatgttttaataaatagagGAGTAAACCTAGATCCTTTAAGCAAATGGTCAAAGGTTGGACTGGTCGTGTATGATTCTCAAGTTCCGATTGGTGCCACTCCTGAGTATATGGCTGGTTTCTACATgCTCCAAAGTGCGAGTTCTTTTTTGCCTGTGATGGCCTTGGCTCCTCAAGAGAAGGAACGAATTGTTGATATGGCTGCTGCACCTGGTGGTAAAACAACTTACATTGCTGCTCTTATGAAGAATACTGGGATACTTTTTGCAAATGAAATGAAGGTGCCACGGCTTAAGTCGTTAACTGCAAATTTGCATCGTATGGGGGTGTCAAACACTGTAGTCTGCAACTATGATGGAAAGGAGCTTCCAAAGGTTTTGGGTCTCAACACTGTTGATAGAGTATTACTTGACGCCCCATGCAGTGGGACTGGTgTTATATCCAAAGATGAGTCTGTTAAGGTCTCTAAAAGTGCGGAAGATATACAGAAATGTGTGCATTTACAGAAGCAATTGATTCTGGCTGCAATTGACATGGCGGATGCTAATTCCAAGTCTGGGGGTTACATTGTTTACTCCACATGTTCCATCATGGTTGCTGAGAATGAATCAGTCATTGATTATGCACTTAAAAAGAGGGATGTTAAACTTGTGCCTTGTGGACTTGACTTTGGACGACCAGGGTTTATAAAGTTCAGGGAACAACGTTTTCACCCTTCTTTAGAAAAGGCAAGGCGTTTTTATCCTCATGTCCACAACATGGATGGATTTTTTGTTGCAAAGTTGAAAAAAATGAGCAACTCAAAGTCAACTGCAAAACCATCAGAACCATTAGAATGGGAGGAAGAAGCTGCGGTGCCtggaaatgaaaaggaagCAGAAGATGCGAAGCCTGCAAAGGAGAAGGAAAGTGCAAAGCCTGCAAAAAACGAGAAGCTAAGTAAtggcataaaagaaaatggcaaagaAGCATCCGAGTccaaaaagaggaagaaaaggacCTTTCTATCTAAGCAGGAAATCTCAAAACTCAGGGAAGACAAGAGAAGAGCtttgagagaaaatagaaaaaagaaggccGGAAGCAACAAGACTGAAAATGGAGAATG 1850 0.3735 MAAPALNKKKTSKSQKAPPKKKQKHELFTPKDGEFNETSEHSDSEKEEIVGQEGSEGDEPGYDSGSAEFSSDGDNPFTDDFLQGSDDEDEAEGSASDSGSDSDEYHNIEKKSRAIDEEMEKRKKEAEEEIKLNMQEESDEFRLPSKEELEEEALRPPDLPNLQRRIKEIVRVLSNFKSLRHEGSTRKDYIEQLKKDICSYYGYNEFLMGALVELFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNTGILFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKVSKSAEDIQKCVHLQKQLILAAIDMADANSKSGGYIVYSTCSIMVAENESVIDYALKKRDVKLVPCGLDFGRPGFIKFREQRFHPSLEKARRFYPHVHNMDGFFVAKLKKMSNSKSTAKPSEPLEWEEEAAVPGNEKEAEDAKPAKEKESAKPAKNEKLSNGIKENGKEASESKKRKKRTFLSKQEISKLREDKRRALRENRKKKAGSNKTENGE 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02600 616 MobiDBLite consensus disorder prediction 1 153 - -
Bva12g02600 616 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 219 296 IPR031341 -
Bva12g02600 616 Pfam 16S rRNA methyltransferase RsmB/F 300 510 IPR001678 GO:0008168
Bva12g02600 616 Gene3D Sun protein; domain 3 189 296 - -
Bva12g02600 616 MobiDBLite consensus disorder prediction 21 53 - -
Bva12g02600 616 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 7 603 IPR023267 GO:0001510
Bva12g02600 616 MobiDBLite consensus disorder prediction 515 616 - -
Bva12g02600 616 Coils Coil 108 136 - -
Bva12g02600 616 Gene3D Vaccinia Virus protein VP39 299 613 IPR029063 -
Bva12g02600 616 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 223 512 IPR001678 GO:0008168
Bva12g02600 616 PRINTS RNA (C5-cytosine) methyltransferase signature 494 511 IPR023267 GO:0001510
Bva12g02600 616 PRINTS RNA (C5-cytosine) methyltransferase signature 283 297 IPR023267 GO:0001510
Bva12g02600 616 PRINTS RNA (C5-cytosine) methyltransferase signature 312 322 IPR023267 GO:0001510
Bva12g02600 616 PRINTS RNA (C5-cytosine) methyltransferase signature 380 392 IPR023267 GO:0001510
Bva12g02600 616 PRINTS RNA (C5-cytosine) methyltransferase signature 434 450 IPR023267 GO:0001510
Bva12g02600 616 ProSitePatterns NOL1/NOP2/sun family signature. 379 390 IPR018314 GO:0003723|GO:0008168
Bva12g02600 616 MobiDBLite consensus disorder prediction 81 97 - -
Bva12g02600 616 MobiDBLite consensus disorder prediction 102 153 - -
Bva12g02600 616 PANTHER BNACNNG49010D PROTEIN 7 603 - -
Bva12g02600 616 MobiDBLite consensus disorder prediction 584 616 - -
Bva12g02600 616 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 195 511 IPR029063 -
Bva12g02600 616 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 235 511 IPR011023 GO:0003723|GO:0006396|GO:0008757
Bva12g02600 616 MobiDBLite consensus disorder prediction 522 577 - -
Bva12g02600 616 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 219 231 IPR023273 GO:0008168
Bva12g02600 616 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 186 206 IPR023273 GO:0008168
Bva12g02600 616 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 242 255 IPR023273 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02600 Bva-Chr12 19264065 19269950 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02600 K14835 - vvi:100265196 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02600 12 19264065 19269950 Bva12g02600 12 19264065 19269950 ECH