Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1570 ATGGCTTCCGCTGCAATTGTGAACGACGTTTCCGATTACTCTGAAAGTGAAGACGAGGATATGGTAAGACCCAACAACACCGAAGGAGAAGAATTGGATGACGATTCTGGGTCTGCTTCTGATTATTCTTTTGATGGCGATAATCCTCTCTCTAATGATATCTTCCAAGGAAGTGATGATGAAGGTTCTGCAGAGGAAAGGGATGACTCTGCGTCAGGTACGGACTCGGATTCAGATTCTGATGGTGATATTGAGAAGAAGTCAAGAGCTATTGATGAAGAAAGGGCGCGAGAAGAAGAAGATGCAGAAGCTGAAATGAAGCTCAATATTCAAGGAGAATCTGATGAGTTTAGATTGCCGACCGAGGAGGAACTCGAGGAAGAGGCTGTACGTCCACCTGCTCTTCAAAATTTGCAGAGAAGAATCAAAGAGATTGTTCGCGTTCTTTCCAATTTTAAGGCTTTAAGAGACGAAGGGTCAACAAGGAAGGATTACATTAACCAGCTCAAGAAAGATATATGTTCATATTATGGTTATAACGAGTTTCTTATTGGGACTTTGGTTGAGCTGTTTCCAGTTGTTGAACTGATGGAATTGATTGAGGCATTTGAAAAGCCACGGCCTATATGTCTAAGGACTAACACTTTGAAGACACGCAGACGGGATTTGGCAGATGTTCTTATAAACAGAGGAGTGAATCTAGATCCTTTAAGTAAATGGTCAAAAGTAGGACTTGTGGTGTATGATTCTCAAGTGCCAATTGGTGCCACTCCTGAGTATATGGCTGGTTTCTATATGCTTCAAAGTGCTAGTTCTTTTCTGCCTGTGATGGCCTTGGCTCCTCAAGAGAAGGAACGGGTTGTTGATATGGCAGCTGCACCTGGTGGTAAAACAACTTACATTGCTGCTCTTATGAAGAATACTGGAATTATCTTTGCAAATGAAATGAAGGTGTCACGGCTTAAATCACTTACTGCAAATTTGCATCGAATGGGAGTGTCAAACACTGTAGTCTGTAACTACGATGGAAAGGAGCTCCCCAAGGTCTTGGGTCTCAATTCTGTCGATAGGGTGTTGTTGGATGCCCCTTGCAGTGGTACTGGGGTTATATCTAAGGATGAGTCTGTGAAAACCTCTAAAAATCTGGAAGATATACAGAAATGTTCCCATCTACAGAAGCAATTGATTCTTGCTGCTATTGACATGGTGGACGCCAATTCAAAATCTGGGGGTTATATTGTTTATTCGACATGCTCCATCATGGTGGCAGAGAATGAAGCAGTAATTGACTATGCTCTCAAAAAGAGGGACGTTAAACTCGTACCATGTGGTCTTGACTTTGGGCGTCCTGGGTTTATAAGGTTTAGGGAACAACGTTTTCACCCGTCATTGGAAAAGACAAGGCGTTTCTATCCTCATGTTCACAATATGGATGGGTTTTTTGTCGCGAAGTTGAAGAAAATGAGTAACTCAAAGCCAAGTGCAAATCCATTAGAACCGGCAGAACAGGAGGAAGGTGCAGAGCTTGTGAATGAAAAGGAGATTACAAGTAATGGCGAGAAGCAAGATGCAGATGACAAAAAGCAAAATACAAATGCCAAAAAACCAATAGCAATTGGCAAAAAACAAACTGCAAATGCCAAAAAGCTAATAGCAAAAGGCAAAAAACAAACTGCAAATGTCAAAAAGCCAATAGAAAATGGCAAAAAACAAACTGCAAACGGCGAACAAGCATCTGAATCCAAAAAGAGGAAGAAAAGGCAATTTCCATCCAGAGAGGAAATTTCGAAATCCAGGGAAGAGAAGAGGAGAGCTTTAAGAGACAAGAAAGGAAAGAAGGCAGGAAGCAAAAAGGCTAAAACTGGGAATTGA 1872 0.4161 MASAAIVNDVSDYSESEDEDMVRPNNTEGEELDDDSGSASDYSFDGDNPLSNDIFQGSDDEGSAEERDDSASGTDSDSDSDGDIEKKSRAIDEERAREEEDAEAEMKLNIQGESDEFRLPTEEELEEEAVRPPALQNLQRRIKEIVRVLSNFKALRDEGSTRKDYINQLKKDICSYYGYNEFLIGTLVELFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGIIFANEMKVSRLKSLTANLHRMGVSNTVVCNYDGKELPKVLGLNSVDRVLLDAPCSGTGVISKDESVKTSKNLEDIQKCSHLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREQRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKPSANPLEPAEQEEGAELVNEKEITSNGEKQDADDKKQNTNAKKPIAIGKKQTANAKKLIAKGKKQTANVKKPIENGKKQTANGEQASESKKRKKRQFPSREEISKSREEKRRALRDKKGKKAGSKKAKTGN 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1570 623 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 195 272 IPR031341 -
Mibi05g1570 623 Coils Coil 135 155 - -
Mibi05g1570 623 MobiDBLite consensus disorder prediction 41 58 - -
Mibi05g1570 623 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 199 488 IPR001678 GO:0008168
Mibi05g1570 623 Gene3D Sun protein; domain 3 165 272 - -
Mibi05g1570 623 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 171 487 IPR029063 -
Mibi05g1570 623 MobiDBLite consensus disorder prediction 608 623 - -
Mibi05g1570 623 Gene3D Vaccinia Virus protein VP39 275 572 IPR029063 -
Mibi05g1570 623 ProSitePatterns NOL1/NOP2/sun family signature. 355 366 IPR018314 GO:0003723|GO:0008168
Mibi05g1570 623 Pfam 16S rRNA methyltransferase RsmB/F 276 486 IPR001678 GO:0008168
Mibi05g1570 623 MobiDBLite consensus disorder prediction 67 107 - -
Mibi05g1570 623 PRINTS RNA (C5-cytosine) methyltransferase signature 288 298 IPR023267 GO:0001510
Mibi05g1570 623 PRINTS RNA (C5-cytosine) methyltransferase signature 470 487 IPR023267 GO:0001510
Mibi05g1570 623 PRINTS RNA (C5-cytosine) methyltransferase signature 410 426 IPR023267 GO:0001510
Mibi05g1570 623 PRINTS RNA (C5-cytosine) methyltransferase signature 259 273 IPR023267 GO:0001510
Mibi05g1570 623 PRINTS RNA (C5-cytosine) methyltransferase signature 356 368 IPR023267 GO:0001510
Mibi05g1570 623 MobiDBLite consensus disorder prediction 516 532 - -
Mibi05g1570 623 FunFam Ribosomal RNA methyltransferase Nop2 166 272 - -
Mibi05g1570 623 MobiDBLite consensus disorder prediction 516 623 - -
Mibi05g1570 623 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 218 231 IPR023273 GO:0008168
Mibi05g1570 623 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 195 207 IPR023273 GO:0008168
Mibi05g1570 623 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 162 182 IPR023273 GO:0008168
Mibi05g1570 623 MobiDBLite consensus disorder prediction 576 607 - -
Mibi05g1570 623 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 211 487 IPR011023 GO:0003723|GO:0006396|GO:0008757
Mibi05g1570 623 MobiDBLite consensus disorder prediction 1 107 - -
Mibi05g1570 623 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 77 491 IPR023267 GO:0001510
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1570 Mibi-ChrMibi05 18491209 18498025 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g1570 05 18491209 18498025 Mibi05g1570 05 18491209 18498025 ECH