Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0217 ATGGCCCCTGCAGTGCTTAATAAGAAGAAAGCTTTGAAGTCACAGAAGGCTCCGCCAAAAAAGAAACAAAAGAATGAACTTTTCACTCCCAAGGACGCAAATGTGAATGAACTTTCCGACCATTCTGACAGCGAAGATGAGGAGATGCTAAGACACGAAGTGTCTGAAGGAGATGAACTAGGAGCCGATTCTGGGTCTGCTTCTGAAGCTTCTTCTGATGGGGATAATCCCTTCACTGACGATTTCCTCCAGGGAAGTGATGAAGAAGAGAAAGGCTCAGCTTCGGATTCGGGTTCGGATTCTGATGAATATGATATTGAAAAAAAGTCAAGAGCTATTGATGAAGAAAAGGCGAGAGAAGAGGAAGATGCAGAAGCTGAAATGCAGCTCAATATTAAAGAAGAATCTGATGAGTTTAGACTTCCGACCAAGGAGGAACTTGAGGAAGAGGCCCTACGTCCACCTGATCTTCCAAATCTTCAAAGGAGAATAAAAGAGATTGTTCGCGTTCTTTCGAATTTTAAGGCTTTGAGGCAAGAAGGGTCAACCAGGAAGGATTACATTGAACAGCTTAAGAAAGATATACGTTCATACTATGGCTACAACGAGTTTCTTATTGGGGCTTTAGTGGAGATTTTTCCTGTTGTTGAACTTATGGAACTGATTGAAGCCTTTGAAAAGCCCCGGCCTATATGTCTGAGGACTAACACCTTAAAGACACGCAGACGGGATTTGGCAGATGTTTTGATAAACAGAGGAGTAAATCTAGATCCTTTAAGCAAATGGTCAAAAGTTGGACTGGTTGTGTATGATTCTCAAGTACCAATTGGTGCCACTCCCGAGTATATGGCTGGTTTCTATATGCTTCAAAGTGCTAGTTCTTTTCTGCCTGTGATGGCCTTGGCTCCTCAAGAGAAGGAGCGCATTGTTGATATGGCGGCTGCACCTGGCGGTAAAACAACTTATATTGCTGCTCTTATGAAGAATACTGGAATAGTTTTTGCAAATGAAATGAAGGCACCGAGGCTTAAATCACTTACTGCAAATTTGCATCGCATGGGGGTGTCAAACACTGTAGTCTGTAACTATGATGGGAAGGAGCTTCCTAAGGTTTTGGGTCTCAATTCTGTTGATAGAGTATTGTTGGATGCCCCTTGCAGTGGAACTGGGGTTATATCCAAAGACGAGTCTGTTAAAACCTCTAAAGATTTGGAAGATATACAGAAATGTGCCAATCTGCAGAAGCAACTGATTCTTGCTGCAATTGACATGGTGGATTCTAATTCAAAATCTGGGGGTTACATTGTTTATTCCACATGCTCCATCATGGTCGCTGAGAATGAAGCAATTATTGACTATGCTCTTAAAAAGAGGGATGTTAAACTGGTGCCATGTGGACTTGACTTTGGACGTCCTGGGTTTAAAAGGTTTAGAGAACAACGTTTTCACCCTTCTTTGGAAAAGACAAGACGTTTCTATCCTCATGTTCACAATATGGATGGGTTTTTTGTTGCAAAGTTGAAAAAAATGAGCAACTCTAAGCCAGTTGCAAAACCATCAGAACCATCAGAGGAGGAAGAAGGTGCCAGGATTGTGAAGGAAAAGAAGAATCTAAGTAATGGCCAAAAGCAAAATGCAAATGGCAAAGAAGTTTCTGTATCTGAAACCAGAAAGAGGAAGAAAAGGCAATTTCCATCTAAGGAGGAAATTTCAAAGGCCAGAGAAGAGAAGAGAGGAGCTTTAAGAGAAAAGAGAGGCAAGAAGGCAGGAAGCAAGAAGACTGAAAATGGGGATTGA 1797 0.4179 MAPAVLNKKKALKSQKAPPKKKQKNELFTPKDANVNELSDHSDSEDEEMLRHEVSEGDELGADSGSASEASSDGDNPFTDDFLQGSDEEEKGSASDSGSDSDEYDIEKKSRAIDEEKAREEEDAEAEMQLNIKEESDEFRLPTKEELEEEALRPPDLPNLQRRIKEIVRVLSNFKALRQEGSTRKDYIEQLKKDIRSYYGYNEFLIGALVEIFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNTGIVFANEMKAPRLKSLTANLHRMGVSNTVVCNYDGKELPKVLGLNSVDRVLLDAPCSGTGVISKDESVKTSKDLEDIQKCANLQKQLILAAIDMVDSNSKSGGYIVYSTCSIMVAENEAIIDYALKKRDVKLVPCGLDFGRPGFKRFREQRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKPVAKPSEPSEEEEGARIVKEKKNLSNGQKQNANGKEVSVSETRKRKKRQFPSKEEISKAREEKRGALREKRGKKAGSKKTENGD 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0217 598 PRINTS RNA (C5-cytosine) methyltransferase signature 281 295 IPR023267 GO:0001510
Glsi08g0217 598 PRINTS RNA (C5-cytosine) methyltransferase signature 492 509 IPR023267 GO:0001510
Glsi08g0217 598 PRINTS RNA (C5-cytosine) methyltransferase signature 432 448 IPR023267 GO:0001510
Glsi08g0217 598 PRINTS RNA (C5-cytosine) methyltransferase signature 310 320 IPR023267 GO:0001510
Glsi08g0217 598 PRINTS RNA (C5-cytosine) methyltransferase signature 378 390 IPR023267 GO:0001510
Glsi08g0217 598 MobiDBLite consensus disorder prediction 36 59 - -
Glsi08g0217 598 MobiDBLite consensus disorder prediction 552 598 - -
Glsi08g0217 598 MobiDBLite consensus disorder prediction 65 79 - -
Glsi08g0217 598 MobiDBLite consensus disorder prediction 519 537 - -
Glsi08g0217 598 FunFam Ribosomal RNA methyltransferase Nop2 188 294 - -
Glsi08g0217 598 MobiDBLite consensus disorder prediction 511 598 - -
Glsi08g0217 598 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 100 513 IPR023267 GO:0001510
Glsi08g0217 598 MobiDBLite consensus disorder prediction 84 154 - -
Glsi08g0217 598 Pfam 16S rRNA methyltransferase RsmB/F 298 508 IPR001678 GO:0008168
Glsi08g0217 598 Gene3D Vaccinia Virus protein VP39 297 594 IPR029063 -
Glsi08g0217 598 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 184 204 IPR023273 GO:0008168
Glsi08g0217 598 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 217 229 IPR023273 GO:0008168
Glsi08g0217 598 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 240 253 IPR023273 GO:0008168
Glsi08g0217 598 Gene3D Sun protein; domain 3 187 294 - -
Glsi08g0217 598 MobiDBLite consensus disorder prediction 1 154 - -
Glsi08g0217 598 NCBIfam NOL1/NOP2/sun family putative RNA methylase 233 509 IPR011023 GO:0003723|GO:0006396|GO:0008757
Glsi08g0217 598 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 221 510 IPR001678 GO:0008168
Glsi08g0217 598 ProSitePatterns NOL1/NOP2/sun family signature. 377 388 IPR018314 GO:0003723|GO:0008168
Glsi08g0217 598 Coils Coil 118 138 - -
Glsi08g0217 598 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 194 509 IPR029063 -
Glsi08g0217 598 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 217 294 IPR031341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0217 Glsi-ChrGlsi08 1915219 1922299 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0217 08 1915219 1922299 Glsi08g0217 08 1915219 1922299 ECH