Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0801 ATGCCTTCACAGAAGATCAAAACAGGTCACCAGGACACAGTCCATGATGTTGCCATGGATTACTATGGAAAGAGAGTGGCAACAGCTTCATCTGATAGCACCGTTAAGATAATTGGTGTTAGCAATAATGCTTCACAACACCTTGCTACTTTGACTGGCCATCAAGGCCCTGTTTGGCAGGTTGCTTGGGCACACCCCAAGTTTGGATCAATCCTTGCTTCTTGTTCCTGTGATGGCCGAGTGATAATCTGGAAGGAAGGAAATCAAAATGACTGGACACAAGCTCATGTTTTCAGTGATCGTAAATCATCTGTCAACTCCATTGCCTGGGCACCTCATGAACTTGGCCTCTGCTTGGCTTGTGGATCCTCTGATGGGAATATCTCTGTCTTCACTGCTAGGTCTGATGGCGCTTGGGACACCACAAAGATAGATCAAGCTCACCCTGTTGGAGTAACCTCAGTTTCATGGGCCCCATCAATGGCTCCTGGTGCTCTGGTTGGATCTGGTCTGCTGGATCCTGTTCAGAAGCTGGTTTCTGGTGGCTGTGATAATACTGTGAAGGTGTGGAAGCTATACAACGGGAATTGGAAGATGGACTGTTTCCCTGCTCTTCAGATGCATACAGATTGGGTAAGGGATGTGGCTTGGGCACCCAACTTGGGGCTTCCAAAGTCCACAATTGCAAGTGCTTCACAGGATGGAACAGTTGTAATATGGACTGTGGGCAAGGAAGGTGATCAATGGGAGGGTAAAGTTTTGAAGGATTTCAAGACCCCAGTTTGGAGGGTCTCATGGTCGCTGACTGGAAACCTATTGGCTGTGGCTGATGGAAACAATAATGTGACATTATGGAAAGAAGCAGTTGATGGTGAGTGGCAACAGGTTACTACAGTGGACCCATATCATTTAGCCTGA 918 0.4739 MPSQKIKTGHQDTVHDVAMDYYGKRVATASSDSTVKIIGVSNNASQHLATLTGHQGPVWQVAWAHPKFGSILASCSCDGRVIIWKEGNQNDWTQAHVFSDRKSSVNSIAWAPHELGLCLACGSSDGNISVFTARSDGAWDTTKIDQAHPVGVTSVSWAPSMAPGALVGSGLLDPVQKLVSGGCDNTVKVWKLYNGNWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGTVVIWTVGKEGDQWEGKVLKDFKTPVWRVSWSLTGNLLAVADGNNNVTLWKEAVDGEWQQVTTVDPYHLA* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0801 305 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 242 IPR001680 GO:0005515
Vvi19g0801 305 ProSiteProfiles Trp-Asp (WD) repeats profile. 51 85 IPR001680 GO:0005515
Vvi19g0801 305 SMART WD40_4 91 132 IPR001680 GO:0005515
Vvi19g0801 305 SMART WD40_4 198 241 IPR001680 GO:0005515
Vvi19g0801 305 SMART WD40_4 138 191 IPR001680 GO:0005515
Vvi19g0801 305 SMART WD40_4 44 85 IPR001680 GO:0005515
Vvi19g0801 305 SMART WD40_4 247 286 IPR001680 GO:0005515
Vvi19g0801 305 SMART WD40_4 2 39 IPR001680 GO:0005515
Vvi19g0801 305 SUPERFAMILY WD40 repeat-like 7 286 IPR036322 GO:0005515
Vvi19g0801 305 FunFam SEC13 homolog (S. cerevisiae) 1 301 - -
Vvi19g0801 305 Gene3D - 1 301 IPR015943 GO:0005515
Vvi19g0801 305 PANTHER NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER 1 300 IPR037363 GO:0005198
Vvi19g0801 305 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 205 242 - -
Vvi19g0801 305 ProSiteProfiles Trp-Asp (WD) repeats profile. 7 48 IPR001680 GO:0005515
Vvi19g0801 305 Pfam WD domain, G-beta repeat 206 240 IPR001680 GO:0005515
Vvi19g0801 305 Pfam WD domain, G-beta repeat 46 85 IPR001680 GO:0005515
Vvi19g0801 305 Pfam WD domain, G-beta repeat 146 191 IPR001680 GO:0005515
Vvi19g0801 305 Pfam WD domain, G-beta repeat 5 37 IPR001680 GO:0005515
Vvi19g0801 305 PRINTS G protein beta WD-40 repeat signature 72 86 IPR020472 -
Vvi19g0801 305 PRINTS G protein beta WD-40 repeat signature 178 192 IPR020472 -
Vvi19g0801 305 PRINTS G protein beta WD-40 repeat signature 228 242 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0801 Vvi-Chr19 8933286 8934203 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0801 K14004 - vvi:100242906 646.351