Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00989 ATGGCTCCCGCGAGGAAGAAACCTTCGAAGGCACGCAAGTCCCCGAAGAACCCTAAGAAGGCCCAACCCAAGCACGATTCCAGCTCCGAATCCGAAGAAGACACGCCGTCGCAGCAGCAACCGCAGCAACTCGAACTCGGCGATGACAACTCAGATTCTGCGTCGGAGCTCTCTTCTGGAGGGGACGATCCGTTAGCAGACGATTTCCTCCAAGGAAGCGATGATGATGATGAAGGGAAAGCCCCGGGTTCGGACTCAGGTTCTGGTTCTGATTCTGATGATTATGACATCGAGGAGAAGTCGAGAGCTATTGATGAAGAGAAGGCGAAAGAGGAAGAGGACGCGGAAGCCGAAATGCAGCTCAATATCAACCAAGAGTCTGATGAGTTCAGATTACCGACCCAAGAGGAACTCGAAGAAGAGGCTTTGCGTCCACCTGATCTTTCCAATCTCCAAAGGAGGATTAAAGAGATTGTTCGTGTTCTTTCAAATTTTAAGGTTTTGAGGCAAGATGGGGCAACCAGGAAAGATTATGTTGAACAGCTTAAGAAAGATATTTGCACATACTATGGCTACAACGAGTTTCTAATGGGTGCTCTAGTGGAGATGTTTCCAGTTGTTGAACTTATGGAACTGATTGAAGCCTTTGAAAAGCCACGCCCTATATGTCTAAGGACTAATACATTGAAGACACGCAGAAGGGATTTGGCTGATGTTTTGATAAATAGGGGTGTTAATTTGGATCCTTTAAGCAAATGGTCAAAGGTTGGACTTGTTGTGTATGATTCTCAAGTGCCAATTGGTGCCACTCCTGAGTATATGGCTGGTTTCTACATGTTACAAAGTGCAAGCTCTTTTCTGCCTGTCATGGCCTTGGCTCCTCAAGAGAAGGAACGAGTTGTTGATATGGCCGCTGCACCTGGTGGTAAAACAACTTACATTGCTGCTCTAATGAAGAACACTGGAATAATTTTTGCAAATGAAATGAAGGTACCGAGGCTTAAGTCATTGACTGCAAATTTGCATCGTATGGGTGTATCCAACACTGTAGTCTGTAACTATGATGGAAAGGAGCTTCCAAAAGTTCTAGGTGTCAATGCTGTTGATAGAGTATTATTGGATGCCCCTTGCAGTGGAACTGGGGTTATATCGAAAGATGAGTCTGTTAAAACCTCTAAAAATTTGGAAGATATACAGAAGTGTGCGCAGCTACAGAAGGAGCTAATTCTTGCGGCAATTGACATGGTGGATGCTAATTCAAAATCTGGGGGATACATTGTTTATTCTACATGCTCAATCATGGTTGCTGAGAACGAAGCAGTTATTGACTATGCACTCAAAAAGCGGGATGTTAAACTGGTTCCGTGTGGACTTGATTTTGGTCGTCCAGGTTTTATAAGGTTTAGGGAACAACGTTTTCACCCTTCTTTGGAAAAGACAAGGCGTTTCTATCCTCACGTACAAAATATGGATGGTTTTTTTGTAGCAAAGTTGAAAAAAATGAGTAGCTCAAAGCCTGGTGCAAAATCATCAGAAACAGCCGAGAAGGAGGAAGATATTCCTACTGAGGTGGAGAATGAAAAGGAGAAATCAAATGATGGCAAAAAAGAAAATGGCAATGCAACTTCCGAATCTGAATCCAAAAAGACGAAGAAAAGAAAGTTCCCTTCTAAACCAGTTAATGGTGTAAAAGAAAATGGCAAAGAATCTTCTGAATTTGAGCCCAAAAAGAGGATGAAGAGGAAATTTCCATCAAAGGAAGAGATTTCAAAAGCCAGGGAGGAGAAGAGAAACGATTTACGACAAAAAAAGAGAAAAGTTATTAAACAACAGAAGCAAAAATGA 1845 0.4271 MAPARKKPSKARKSPKNPKKAQPKHDSSSESEEDTPSQQQPQQLELGDDNSDSASELSSGGDDPLADDFLQGSDDDDEGKAPGSDSGSGSDSDDYDIEEKSRAIDEEKAKEEEDAEAEMQLNINQESDEFRLPTQEELEEEALRPPDLSNLQRRIKEIVRVLSNFKVLRQDGATRKDYVEQLKKDICTYYGYNEFLMGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGIIFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKELPKVLGVNAVDRVLLDAPCSGTGVISKDESVKTSKNLEDIQKCAQLQKELILAAIDMVDANSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREQRFHPSLEKTRRFYPHVQNMDGFFVAKLKKMSSSKPGAKSSETAEKEEDIPTEVENEKEKSNDGKKENGNATSESESKKTKKRKFPSKPVNGVKENGKESSEFEPKKRMKRKFPSKEEISKAREEKRNDLRQKKRKVIKQQKQK 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00989 614 Coils Coil 109 129 - -
Viun6g00989 614 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 95 503 IPR023267 GO:0001510
Viun6g00989 614 Gene3D Sun protein; domain 3 178 285 - -
Viun6g00989 614 Pfam 16S rRNA methyltransferase RsmB/F 289 499 IPR001678 GO:0008168
Viun6g00989 614 Gene3D Vaccinia Virus protein VP39 288 610 IPR029063 -
Viun6g00989 614 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 175 195 IPR023273 GO:0008168
Viun6g00989 614 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 208 220 IPR023273 GO:0008168
Viun6g00989 614 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 231 244 IPR023273 GO:0008168
Viun6g00989 614 MobiDBLite consensus disorder prediction 1 142 - -
Viun6g00989 614 MobiDBLite consensus disorder prediction 1 19 - -
Viun6g00989 614 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 184 500 IPR029063 -
Viun6g00989 614 MobiDBLite consensus disorder prediction 510 551 - -
Viun6g00989 614 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 288 613 - -
Viun6g00989 614 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 208 285 IPR031341 -
Viun6g00989 614 NCBIfam NOL1/NOP2/sun family putative RNA methylase 224 500 IPR011023 GO:0003723|GO:0006396|GO:0008757
Viun6g00989 614 MobiDBLite consensus disorder prediction 33 58 - -
Viun6g00989 614 PRINTS RNA (C5-cytosine) methyltransferase signature 483 500 IPR023267 GO:0001510
Viun6g00989 614 PRINTS RNA (C5-cytosine) methyltransferase signature 369 381 IPR023267 GO:0001510
Viun6g00989 614 PRINTS RNA (C5-cytosine) methyltransferase signature 301 311 IPR023267 GO:0001510
Viun6g00989 614 PRINTS RNA (C5-cytosine) methyltransferase signature 272 286 IPR023267 GO:0001510
Viun6g00989 614 PRINTS RNA (C5-cytosine) methyltransferase signature 423 439 IPR023267 GO:0001510
Viun6g00989 614 MobiDBLite consensus disorder prediction 565 601 - -
Viun6g00989 614 MobiDBLite consensus disorder prediction 93 117 - -
Viun6g00989 614 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 212 501 IPR001678 GO:0008168
Viun6g00989 614 FunFam Ribosomal RNA methyltransferase Nop2 179 285 - -
Viun6g00989 614 Coils Coil 586 613 - -
Viun6g00989 614 ProSitePatterns NOL1/NOP2/sun family signature. 368 379 IPR018314 GO:0003723|GO:0008168
Viun6g00989 614 MobiDBLite consensus disorder prediction 503 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00989 Viun-Chr6 19387650 19393377 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00989 K14835 - gmx:100807160 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00989 6 19387650 19393377 Viun6g00989 6 19387650 19393377 ECH