Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2355 ATGGCTCCCGCAAGGAAGACACCTTCGAAGCCACGCAAATCCCCGAAGAACCCTAAGAAGATCCAACCCAAACACGATTCCAGCTCCGAATCTGAAGAAGAGACGCCGCCGCAACTGCAACCAGAGCAACTCGAACTCGGCGACGATAACGACGACGCCGACAACAACTCCGATTCCGCGTCGGAGCTCTCCTCCGACGGCGACGATCCTTTAGTCGACGATTTCCTCCAAGGAAGCGATGACGACGAAGAGAAAGGCTCAGGTTCGGAGTCAGGTTTGGAGTCTGGTTCTGATTCGGATGATGATGATATTGAAAAGAAGTCGATAGCTATTGATGAGGCAAAAGCGAGAGAGGAAGAGGATGCGGAGGCCGAACTACAGCTTAACATCAACCAAGAGTCTGATGAGTTCAGATTGCCTACCAAAGAGGAGCTTGAGGACGAGACCCTCCGCCCACCTGATCTTACCAATCTCCAGAGGAGAATCAAAGAGATTGTTCGTATTCTTTCAAATTTTAAGGCTTTGAGGCAAGACGGTTCAACGAGAAAAGAGTATGTTGAACAGCTTACGAAAGATTTATTGACGTACTATGGCTACAATGAGTTTCTAATTGGTGCTCTAGTGGAGATGTTTCCAGTTGTTGAACTTATGGAACTGATTGAAGCCTTTGAAAAGCCACGTCCTATGTGTCTGAGGACTAATACATTGAAGACTCGCAGACGGGATTTGGCAGATGTTTTGATAAATAGGGGAGTAAATTTGGATCCTTTAAGCAAATGGTCTAAGGTTGGGCTTGTTGTGTATGATTCTCAAGTGCCTATTGGTGCCACTCCTGAGTATATGGCTGGTTTCTACATGCTTCAAAGTGCAAGCTCTTTTCTGCCTGTGATGGCTTTGGCTCCTCAAGAGAACGAACGAGTTGTTGATATGGCAGCTGCACCTGGTGGTAAAACAACTTACATTGCTGCTCTAATGAAGAACACTGGAATAATTTTTGCAAATGAAATGAAAGTTCCAAGGCTTAAGTCACTGACTGCAAATTTGCATCGCATGGGTGTATCTAACACTGTGGTGTCTAACTATGATGGAAAGGAGCTTCCAAAGGTTTTAGGTGTCAATGCTGTTGATAGAGTATTAATTGATGCCCCTTGCAGTGGAACTGGGGTTATATCCAAAGATGAATCTGTTAAAACCTCTAAAAGTCTGGAAGATATACAGAAATGTGCGCAGCTACAGAAGGAGCTCATTCTTGCAGCAATTGACATGGTGGATGCTAATTCAAAATCTGGGGGATACATTGTATATTCTACATGCTCAATTATGGTTGCCGAGAATGAAGCAGTTATTGACTATGCACTCAAAAAGCGGGATGTTAAACTTGTTCCTTGTGGACTTGATTTTGGGCGTCCAGGATTTATAAGGTTTAGGGAACAACGTTTTCACCCTTCTTTAGAAAAGACAAGGCGTTTCTATCCTCACGTAAACAATATGGATGGTTTTTTTGTTGCTAAGTTGAAAAAAATGAGCAGCTCAAAGCCTGGTGCAAAATCATCAGAAGAAACAGCCGAGAAGGAAGAAGGTACTACTACATTTGAGAAGGAAATTGAGAAATCAAGTGATGGCATAAAAGAAAATGGCAATGTATCTTCTGAATTCGAATCCAAAAAGGGGGGGAAGAAAAGAAAGTTCCCCACAAAACCAAGTAACGGTCCAATAAAAGAAAATAGCAAAGAATCTTCAGAATCTGAACCCAAAAAGTGGAAGAAAAGGAAGTTTTCATCCAGGGAAGAGATTTCAAAAGCCAGGGAGGAGAAGAGAAATGCTTTAAGAGAAAATAAGAGAAAAGGTAGCAAACAACAGAAGCTAAAATGA 1872 0.4279 MAPARKTPSKPRKSPKNPKKIQPKHDSSSESEEETPPQLQPEQLELGDDNDDADNNSDSASELSSDGDDPLVDDFLQGSDDDEEKGSGSESGLESGSDSDDDDIEKKSIAIDEAKAREEEDAEAELQLNINQESDEFRLPTKEELEDETLRPPDLTNLQRRIKEIVRILSNFKALRQDGSTRKEYVEQLTKDLLTYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPMCLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQENERVVDMAAAPGGKTTYIAALMKNTGIIFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKVLGVNAVDRVLIDAPCSGTGVISKDESVKTSKSLEDIQKCAQLQKELILAAIDMVDANSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREQRFHPSLEKTRRFYPHVNNMDGFFVAKLKKMSSSKPGAKSSEETAEKEEGTTTFEKEIEKSSDGIKENGNVSSEFESKKGGKKRKFPTKPSNGPIKENSKESSESEPKKWKKRKFSSREEISKAREEKRNALRENKRKGSKQQKLK 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2355 623 MobiDBLite consensus disorder prediction 576 615 - -
Aed4g2355 623 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 231 507 IPR011023 GO:0003723|GO:0006396|GO:0008757
Aed4g2355 623 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 219 508 IPR001678 GO:0008168
Aed4g2355 623 ProSitePatterns NOL1/NOP2/sun family signature. 375 386 IPR018314 GO:0003723|GO:0008168
Aed4g2355 623 Gene3D Sun protein; domain 3 185 292 - -
Aed4g2355 623 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 215 292 IPR031341 -
Aed4g2355 623 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 238 251 IPR023273 GO:0008168
Aed4g2355 623 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 215 227 IPR023273 GO:0008168
Aed4g2355 623 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 182 202 IPR023273 GO:0008168
Aed4g2355 623 PANTHER BNACNNG49010D PROTEIN 40 597 - -
Aed4g2355 623 MobiDBLite consensus disorder prediction 510 623 - -
Aed4g2355 623 Coils Coil 595 618 - -
Aed4g2355 623 MobiDBLite consensus disorder prediction 1 105 - -
Aed4g2355 623 PRINTS RNA (C5-cytosine) methyltransferase signature 308 318 IPR023267 GO:0001510
Aed4g2355 623 PRINTS RNA (C5-cytosine) methyltransferase signature 490 507 IPR023267 GO:0001510
Aed4g2355 623 PRINTS RNA (C5-cytosine) methyltransferase signature 279 293 IPR023267 GO:0001510
Aed4g2355 623 PRINTS RNA (C5-cytosine) methyltransferase signature 376 388 IPR023267 GO:0001510
Aed4g2355 623 PRINTS RNA (C5-cytosine) methyltransferase signature 430 446 IPR023267 GO:0001510
Aed4g2355 623 MobiDBLite consensus disorder prediction 517 541 - -
Aed4g2355 623 Pfam 16S rRNA methyltransferase RsmB/F 296 506 IPR001678 GO:0008168
Aed4g2355 623 Coils Coil 116 136 - -
Aed4g2355 623 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 40 597 IPR023267 GO:0001510
Aed4g2355 623 Gene3D Vaccinia Virus protein VP39 295 620 IPR029063 -
Aed4g2355 623 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 191 507 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2355 Aed-Chr4 25951307 25957133 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2355 K14835 - gmx:100789776 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2355 4 25951307 25957133 Aed4g2355 4 25951307 25957133 ECH