Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01888 ATGGCTCCCGCTAGGAAGAAACCTTCAAAGCCACGCAAATCCCCGAAGAACCCTAAGAAGACCCAACCCAAGCACGATTCTGGCTCCGAATCCGAAGAAGACACGGTGCCGCAGCTGCAACCGCAGCAACTTGAACTTGGCGACGACAACTCCGATTCCGCGTCGGAGCTCTCTTCCGACGGGGACGACCCCTTAGCCGACGATTTCCTCCAAGGAACCGATGACGACGAAGGGAAAGCCTCAGGTTCCGGTTCTGATTCGGATGATTATGATATTGAAGAGAAGTCGAGAGCTATTGATGAAGAGAAAGCGAGAGAGGAAGAGGATGCAGAGGCCGAAATGCAACTCAATATCAATCAAGAGTCTGATGAGTTCAGATTGCCAACCAAAGAGGAACTTGACGAAGAGGCTTTGCGTCCACCTGATCTTTCGAATCTCCAAAGGAGGACTAAAGAGATTGTTCGAGTTCTTTCAAATTTTAAGGTTTTGAGGCAAGAAGGGGCAACGAGAAAAGATTATGTTGAACAGCTTAAGAAAGATATTTGTACGTACTATGGCTACAATGAATATCTAATCGGTGTTCTAGTGGAGATGTTTCCAGTTGTTGAACTTATGGAACTGATTGAAGCCTTTGAAAAGCCACGCCCTATATGTCTGAGAACTAACACATTGAAGACACGAAGAAGGGATTTGGCAGATGTGTTGATAAATAGGGGAATTAATTTGGATCCTTTAAGCAAATGGTCAAAGGTTGGACTTGTTGTGTATGATTCTCAAGTGCCAATTGGTGCCACTCCTGAGTATATGGCTGGTTTCTACATGTTACAAAGTGCGAGCTCTTTTCTGCCTGTCATGGCCTTGGCTCCTCAAGAGAAAGAACGAGTTGTTGATATGGCAGCTGCACCAGGTGGTAAAACAACTTACATTGCTGCTCTAATGAAGAATACTGGAATCATTTTTGCAAATGAAATGAAGGTGCCAAGGCTTAAGTCTTTGACTGCAAATTTGCATCGTATGGGTGTATCTAACACTGTAGTCTGTAACTACGATGGAAAGGAGCTTCCAAAAGTTTTAGGTGTCAATGCCGTTGATAGAGTATTATTGGATGCCCCTTGCAGTGGAACTGGGGTTATATCCAAAGATGAGTCTGTGAAAACCTCTAAAAGTTTGGAAGATATACAGAAATGTGCGCAGCTACAGAAGGAGCTCATTCTTGCGGCAATTGACATGGTGGATGCTAATTCAAAATCTGGGGGATACATTGTTTATTCGACATGCTCAATCATGGTTGCTGAGAATGAAGCAGTTATTGACTATGCACTTAAAAAGAGAGATGTTAAACTGGTTCCCTGTGGACTTGATTTTGGGCGTCCAGGGTTTATAAGGTTTAGGGAACAACGTTTTCACCCTTCTTTGGAAAAGACAAGGCGTTTCTATCCTCATGTACAAAATATGGATGGTTTTTTTGTTGCAAAGTTAAAAAAAATGAGCAGCTCAAAGCCTGGTGCAAAATCAACAGAAATAGCTGAGGAGGAAGAAGGTACTACTACGTTGGAGAAAGAAAACGAGAAATCAAATGATGGCAAGAAAGAAAATGGCAATGCAACTTTTGAATCCGAATCCAATAAGACGAAAAAAAGAAAGTTCCCCTCGAAATCAGTTAACGGTCTAAAAGTAAATGGCAAAGAATCTTCTGAATCTGAGCCCAAAAAGAGGACCAAAAGGCAATTTCCATCCAAGGAAGAGATTTCAAAAGCCAGGGAGGAGAAGAGAAACGCTTTAAGAGAAAAAAAGAGAACAAGTAGTAAACAAAAGAAGCAAAAAAAGACCAAAGCCAATGGCAATGCATGA 1851 0.4236 MAPARKKPSKPRKSPKNPKKTQPKHDSGSESEEDTVPQLQPQQLELGDDNSDSASELSSDGDDPLADDFLQGTDDDEGKASGSGSDSDDYDIEEKSRAIDEEKAREEEDAEAEMQLNINQESDEFRLPTKEELDEEALRPPDLSNLQRRTKEIVRVLSNFKVLRQEGATRKDYVEQLKKDICTYYGYNEYLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGINLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGIIFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKELPKVLGVNAVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAQLQKELILAAIDMVDANSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREQRFHPSLEKTRRFYPHVQNMDGFFVAKLKKMSSSKPGAKSTEIAEEEEGTTTLEKENEKSNDGKKENGNATFESESNKTKKRKFPSKSVNGLKVNGKESSESEPKKRTKRQFPSKEEISKAREEKRNALREKKRTSSKQKKQKKTKANGNA 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01888 616 ProSitePatterns NOL1/NOP2/sun family signature. 363 374 IPR018314 GO:0003723|GO:0008168
Spst6g01888 616 Gene3D Vaccinia Virus protein VP39 283 615 IPR029063 -
Spst6g01888 616 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 90 498 IPR023267 GO:0001510
Spst6g01888 616 MobiDBLite consensus disorder prediction 563 596 - -
Spst6g01888 616 MobiDBLite consensus disorder prediction 72 112 - -
Spst6g01888 616 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 179 495 IPR029063 -
Spst6g01888 616 Coils Coil 104 124 - -
Spst6g01888 616 MobiDBLite consensus disorder prediction 1 135 - -
Spst6g01888 616 MobiDBLite consensus disorder prediction 505 547 - -
Spst6g01888 616 PRINTS RNA (C5-cytosine) methyltransferase signature 296 306 IPR023267 GO:0001510
Spst6g01888 616 PRINTS RNA (C5-cytosine) methyltransferase signature 267 281 IPR023267 GO:0001510
Spst6g01888 616 PRINTS RNA (C5-cytosine) methyltransferase signature 364 376 IPR023267 GO:0001510
Spst6g01888 616 PRINTS RNA (C5-cytosine) methyltransferase signature 478 495 IPR023267 GO:0001510
Spst6g01888 616 PRINTS RNA (C5-cytosine) methyltransferase signature 418 434 IPR023267 GO:0001510
Spst6g01888 616 MobiDBLite consensus disorder prediction 1 19 - -
Spst6g01888 616 MobiDBLite consensus disorder prediction 500 616 - -
Spst6g01888 616 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 203 215 IPR023273 GO:0008168
Spst6g01888 616 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 170 190 IPR023273 GO:0008168
Spst6g01888 616 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 226 239 IPR023273 GO:0008168
Spst6g01888 616 NCBIfam NOL1/NOP2/sun family putative RNA methylase 219 495 IPR011023 GO:0003723|GO:0006396|GO:0008757
Spst6g01888 616 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 203 280 IPR031341 -
Spst6g01888 616 MobiDBLite consensus disorder prediction 33 58 - -
Spst6g01888 616 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 207 496 IPR001678 GO:0008168
Spst6g01888 616 Pfam 16S rRNA methyltransferase RsmB/F 284 494 IPR001678 GO:0008168
Spst6g01888 616 Gene3D Sun protein; domain 3 173 280 - -
Spst6g01888 616 FunFam Ribosomal RNA methyltransferase Nop2 174 280 - -
Spst6g01888 616 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 283 609 - -
Spst6g01888 616 Coils Coil 580 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01888 Spst-Chr6 18077342 18083067 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01888 K14835 - gmx:100789776 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01888 6 18077342 18083067 Spst6g01888 6 18077342 18083067 ECH