Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0802 ATGGCCCCTGCAGCCCTTAATAAGAAAAAGGTCACAAAATCACAAAAACCTCCAGCTCAAAAGAAGCAAAAGAAGGAAGTTTTCACTGCTAAGCCTCCAAAGAAACACGACATTTCTGATGATTCTGATAGCCCAACTGAAGAAATAGTAGATCATGAAGGACTTTTTGAAGAAGAAAATGAAGAAGATGGGTTTGATTCTCATTCTGAAGCTTCTTCTGATGGAGATGATCCATTCACTGATGATTTCCTCCAAGGAGGTGATGATGAAGAGGAAGGTTCAGGTTCAGGTTCAGGTTCAGATTCAGATTCAGATTCAGATTCAGATGAATCTGATATTGAGAAGAAGTCAAGAGCTATTGATGAAGAAAGGGCAAGGGAAGAAGAAGAAGCAGGGGCTGAAATGCAGCTCAACATTAAAGAAGAATCTGACGAGTTCAGATTGCCAACCAAAGAGGAGCTTCAAGAAGAGGCACGCCAACCCCCTGATCTCCCAAATCTTCAGCGGAGGATAAAAGAAATTGTTCGAGTACTGTCAAATTTTAACTCTTTGAGGCAAGAGGGGGCTCAACGGAAGGATTATGTTGAGCAGCTCAGGGTCGATTTAGGTTCATACTATGGTTACAACGAATTCCTCATTGGGGTTTTGGTGGAGATGTTTCCTGTTGTTGAACTTATGGAACTTATTGAAGCTTTTGAAAAACCTCGACCTATTTGTCTACGGACGAATACCTTGAAGACACGTAGAAGGGATTTGGCTGATGTTCTGTTGAACAGAGGGGTAAATTTAGATCCCTTGAGCAAGTGGTCAAAAGTTGGTTTGGTCGTGTATGACTCACAAGTGCCAATTGGTGCCACTCCTGAATATATGGCTGGTTTTTACATGCTGCAAAGTGCAAGCTCATTTTTGCCTGTGATGGCTCTTGCCCCTCAAGAAAAGGAACGGATTGTTGATATGGCGGCTGCACCTGGTGGGAAGACAACCTACATTGCTGCTCTTATGAAAAACGGCGGGCTGCACCGGTGGGAAGACAACCTACATTGCTGCTCTTATGAAAAACAGCGGGATGATCTTCGCAAATGA 1083 0.4321 MAPAALNKKKVTKSQKPPAQKKQKKEVFTAKPPKKHDISDDSDSPTEEIVDHEGLFEEENEEDGFDSHSEASSDGDDPFTDDFLQGGDDEEEGSGSGSGSDSDSDSDSDESDIEKKSRAIDEERAREEEEAGAEMQLNIKEESDEFRLPTKEELQEEARQPPDLPNLQRRIKEIVRVLSNFNSLRQEGAQRKDYVEQLRVDLGSYYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNGGLHRWEDNLHCCSYEKQRDDLRK* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0802 360 Gene3D Vaccinia Virus protein VP39 300 358 IPR029063 -
Vvi19g0802 360 Coils Coil 125 145 - -
Vvi19g0802 360 MobiDBLite consensus disorder prediction 19 51 - -
Vvi19g0802 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 201 337 IPR029063 -
Vvi19g0802 360 Gene3D Sun protein; domain 3 194 299 - -
Vvi19g0802 360 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 228 360 IPR001678 GO:0008168
Vvi19g0802 360 MobiDBLite consensus disorder prediction 109 159 - -
Vvi19g0802 360 FunFam Ribosomal RNA methyltransferase Nop2 195 301 - -
Vvi19g0802 360 Pfam 16S rRNA methyltransferase RsmB/F 305 338 IPR001678 GO:0008168
Vvi19g0802 360 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 224 301 IPR031341 -
Vvi19g0802 360 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 224 236 IPR023273 GO:0008168
Vvi19g0802 360 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 191 211 IPR023273 GO:0008168
Vvi19g0802 360 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 247 260 IPR023273 GO:0008168
Vvi19g0802 360 MobiDBLite consensus disorder prediction 1 166 - -
Vvi19g0802 360 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 103 338 IPR023267 GO:0001510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0802 K14835 - vvi:100265196 578.941