Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01092 ATGGCGCCAGCAACTAAGAAAAAACCTTCAAAGCAACTCAAAGTTCAGAAAGCCCCCAAAAAAGTACAAATTGTTCCCATCAAAGAAGATTCCTCTTCCGAATCGGAAGAAGAAGCACCGCCACAACACCTAGAACTCGGAGATGACAGTGCCGACGACGACTCAGCTTCGGAATTATCTTCTGATGGGGATGGTCAGTTAGGCGACGATTTCCTCCAAGGAAGCGATGAAGATATTGAAAATGAAGAAAAAGCCTCTGGTTCGGAATCTGGTTCGGGTTTGGATTCTGATTCAGATGATGATGATGATATTGAAAAAATTTCGAGAGCTATTGATGAAAAAAAGAAGAGAGAAAAAGATGATGCTGCAGCTGAAATGCAGACCAACATTCAAGAAGAGTCTGATGAGTTTAGATTACCAACCAAACAGGAACTTGAGGAAGAGGCTTTGCGTCCACCTGATCTTTCCAATCTACAGAGGAGGATTAAAGAGATTGTCCGTGTTCTTTCTAATTTTAAGGCATTGAGACAAGAGGATTCGACAAGGAAGGATTATATTGAGCAGCTTAAGAATGATATACGTTCATACTATGGCTACAATGAGTTTCTAATCGGTGCTTTGGTTGAGATGTTTCCAGTTGTTGAACTGATGGAACTGATTGAAGCTTTTGAAAAGCCCCGCCCTATATGTCTGAGGACAAACACTTTGAAGACACGGAGACGGGATTTGGCAGATGTCTTGATAAACAGAGGAGTAAATCTGGATCCTCTGAGCAAATGGTCAAAAGTTGGACTTGTCGTGTATGACTCTCAAGTACCAATTGGTGCCACTCCAGAGTACATGGCTGGTTTTTACATGCTTCAAAGTGCTAGTTCTTTTCTGCCTGTTATGGCCTTGGCTCCTCAAGAAAAGGAACGGATTATTGATATGGCGGCTGCACCTGGTGGTAAAACAACGTACATTGCTGCTCTAATGAAGAACTCTGGAATAATATTTGCAAATGAAATGAAGGTACCGCGACTGAAGTCTCTCACTGCAAATTTGCATCGGATGGGTGTATCAAACACTGTTGTCTGCAACTATGATGGGAAGGAGCTTCCAAAGGTTATGGGTCTCAATGTTGTTGATAGGGTGCTGTTGGATGCGCCTTGCAGTGGAACTGGGGTTATATCCAAAGATGAGTCAGTTAAAACTTCTAAAAACTTGGACGATATAAAGAAATGTGCTCATCTACAGAAGGAGCTTCTTCTTGCTGCAATTGACATGGTGGATTCTAATTCAAAATCTGGGGGATACGTTGTATATTCTACATGCTCAATCATGGTTGCTGAGAATGAAGCAGTTATTGATTATGCACTCAATAGGAGGGATGTTAAGCTGGTTCCATGTGGACTTGACTTTGGGCGTCCAGGGTTCACAAAGTTTAGGGAACAGCGTTTCCATCCTTCGTTAGATAAGACAAGACGTTTCTATCCCCACGTACACAATATGGATGGATTTTTTGTTGCAAAGTTGAAAAAAATGAGCAGCTCAAAACCCATTGCAAAACCATCAACAGAGGACAAAGAAGAAATTGAGCAGGTGAATGACAACAATAAACCAAACAATGACATAAATGAGAATGGCAAGCAACCTTCTGAATCTGAAACCAGAAGAAGAATTGTAAACCGGCGACAAACCAAGAATGTGAAATTTCCCTCCCGACCAAGTAATGGTGTAAAAGCTGATGTCACAGAAACTTCTGAACCTGAATCCAAGAAGAGGAAGAAAAGGAAGTTTAATAGAGAGGAGATTTCAAAAGCAAGAGAGGAGAAGAGACTGGCTTTAATAGAAAACAAGAGAAAAGCTGGCAAGAAACAGAAAAAATGA 1869 0.4125 MAPATKKKPSKQLKVQKAPKKVQIVPIKEDSSSESEEEAPPQHLELGDDSADDDSASELSSDGDGQLGDDFLQGSDEDIENEEKASGSESGSGLDSDSDDDDDIEKISRAIDEKKKREKDDAAAEMQTNIQEESDEFRLPTKQELEEEALRPPDLSNLQRRIKEIVRVLSNFKALRQEDSTRKDYIEQLKNDIRSYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIIDMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKELPKVMGLNVVDRVLLDAPCSGTGVISKDESVKTSKNLDDIKKCAHLQKELLLAAIDMVDSNSKSGGYVVYSTCSIMVAENEAVIDYALNRRDVKLVPCGLDFGRPGFTKFREQRFHPSLDKTRRFYPHVHNMDGFFVAKLKKMSSSKPIAKPSTEDKEEIEQVNDNNKPNNDINENGKQPSESETRRRIVNRRQTKNVKFPSRPSNGVKADVTETSEPESKKRKKRKFNREEISKAREEKRLALIENKRKAGKKQKK 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01092 622 MobiDBLite consensus disorder prediction 516 530 - -
Trre5g01092 622 MobiDBLite consensus disorder prediction 1 138 - -
Trre5g01092 622 NCBIfam NOL1/NOP2/sun family putative RNA methylase 231 507 IPR011023 GO:0003723|GO:0006396|GO:0008757
Trre5g01092 622 Coils Coil 600 620 - -
Trre5g01092 622 MobiDBLite consensus disorder prediction 103 138 - -
Trre5g01092 622 Gene3D Vaccinia Virus protein VP39 296 616 IPR029063 -
Trre5g01092 622 ProSitePatterns NOL1/NOP2/sun family signature. 375 386 IPR018314 GO:0003723|GO:0008168
Trre5g01092 622 Coils Coil 116 136 - -
Trre5g01092 622 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 238 251 IPR023273 GO:0008168
Trre5g01092 622 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 215 227 IPR023273 GO:0008168
Trre5g01092 622 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 182 202 IPR023273 GO:0008168
Trre5g01092 622 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 219 508 IPR001678 GO:0008168
Trre5g01092 622 Pfam 16S rRNA methyltransferase RsmB/F 296 506 IPR001678 GO:0008168
Trre5g01092 622 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 98 510 IPR023267 GO:0001510
Trre5g01092 622 Gene3D Sun protein; domain 3 185 292 - -
Trre5g01092 622 FunFam Ribosomal RNA methyltransferase Nop2 186 292 - -
Trre5g01092 622 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 193 507 IPR029063 -
Trre5g01092 622 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 215 292 IPR031341 -
Trre5g01092 622 PRINTS RNA (C5-cytosine) methyltransferase signature 279 293 IPR023267 GO:0001510
Trre5g01092 622 PRINTS RNA (C5-cytosine) methyltransferase signature 490 507 IPR023267 GO:0001510
Trre5g01092 622 PRINTS RNA (C5-cytosine) methyltransferase signature 376 388 IPR023267 GO:0001510
Trre5g01092 622 PRINTS RNA (C5-cytosine) methyltransferase signature 308 318 IPR023267 GO:0001510
Trre5g01092 622 PRINTS RNA (C5-cytosine) methyltransferase signature 430 446 IPR023267 GO:0001510
Trre5g01092 622 MobiDBLite consensus disorder prediction 579 614 - -
Trre5g01092 622 MobiDBLite consensus disorder prediction 511 622 - -
Trre5g01092 622 MobiDBLite consensus disorder prediction 560 578 - -
Trre5g01092 622 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01092 Trre-Chr5 7645361 7651570 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01092 K14835 - gmx:100807160 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01092 5 7645361 7651570 Trre5g01092 5 7645361 7651570 ECH