Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02475 ATGGCTCCCACGAGGAAGAAACCTTCGAAGCCAAGAAAATCCCCTAAGAACCCTAAGAAGACCCAACCCAAGCACGATTCCAGCTCCGAATCCGAAGAAGAGACGCCGTCGCAGTTGCAACCACAGCAACTCGAACTCGGGGACGACAACTCCGATTCCGCGTCGGAGCTCTCTTCCGAAGGGGACGATCCGTTAGCCGACGATTTCCTCCAAGGAAGCGATGACGACGAAGGGAAAGCCTCGGGTTCGGACTCAGGTTCTGGTTCTGATTCGGATGATTATGATATCGAAGAGAAGTCGAGAGCTATTGATGAAGAGAAGGCGAGAGAGGAAGAGGATGCGGAAGCCGAAATGCAGCTCAATATCAACCAAGAGTCTGATGAGTTCAGATTGCCAACCAAAGAGGAGCTCGAGGAAGAGGCTTTGCGTCCACCTGATCTTTCCAATCTCCAAAGGAGGACTAAAGAGATTGTTCGTGTTCTTTCAAATTTTAAGGTTTTGAGGCAAGATGGGGCAACAAGGAAAGATTATGTTGAACAGCTTAAGAAAGATATTTGCACGTACTATGGCTACAATGAGTTTCTAATGGGTGCTCTAGTGGAGATGTTTCCAGTTGTTGAACTTATGGAACTGATTGAAGCCTATGAAAAGCCACGCCCTATATGTCTAAGGACTAACACGTTGAAGACTCGCAGAAGGGATTTGGCTGATGTTTTGATAAATAGGGGAGTTAATTTGGATCCTTTAAGCAAATGGTCAAAGGTTGGACTTGTTGTGTATGATTCTCAAGTGCCAATTGGTGCCACTCCTGAGTATATGGCTGGTTTCTACATGCTACAAAGTGCGAGCTCTTTTCTGCCTGTCATGGCCTTGGCTCCTCAAGAGAAGGAACGAGTTGTTGATATGGCAGCTGCACCAGGCGGTAAAACAACTTACATTGCTGCTCTAATGAAGAATACTGGAATCATTTTTGCAAATGAAATGAAGGTACCAAGGCTTAAGTCATTGACTGCAAACTTGCATCGTATGGGTGTATCCAACACTGTAGTCTGTAACTACGATGGAAAGGAGCTTCCAAAAATTTTAGGTGTCAATGCCGTTGATAGAGTATTATTGGATGCCCCTTGCAGTGGAACTGGGGTTATATCCAAAGATGAGTCTGTTAAAACCTCTAAAACTTTGGAAGATATACAGAAGTGTGCGCAGCTACAGAAGGAGCTCATTCTTGCTGCAATTGATATGGTGGATGCTAATTCAAAATCTGGGGGATACATTGTTTATTCTACATGCTCAATCATGGTTGCCGAGAATGAAGCAGTTATTGACTATGCACTCAAAAAGCGGGATGTTAAACTGGTTCCGTGTGGCCTTGATTTTGGGCGTCCAGGGTTTATAAGGTTTAGGGAACAACGTTTTCACCCTTCTTTGGAAAAGACAAGGCGTTTCTATCCTCACGTACAAAATATGGATGGTTTTTTTGTTGCAAAGTTGAAAAAAATGAGCAGCTCTAAGCCTGGTGCAAAATCATCAGAAATAGCCGAGAAGGAAGAAGGTATTGTTACTACGTTGGAGAACGAACAGGAGAACGAAAAGGAGAAATCAAATGATGGCAAAAAAGAAAATGGCAAAGCAACTTTTGAATCTGAATCCAAAAAGACGAAGAAAAGAAAGTTCCCCTCGAAACCAGTTAGCGGTTTAAAAGAAAATGGCAAAGAATCTTCTGAATCTGAGCCCAGGAAGAGGACGAAAAGGCAATTTCCATCCAAGGAAGAGATTTCAAAAGCCAGGGAGGAGAAGAGAAACGCGTTACGAGAAAAAAAGAGAAAGGGTAGCAAACAACATAAGCAAAAAGTGACCAAAGCCAATGGCAATACATGA 1878 0.4356 MAPTRKKPSKPRKSPKNPKKTQPKHDSSSESEEETPSQLQPQQLELGDDNSDSASELSSEGDDPLADDFLQGSDDDEGKASGSDSGSGSDSDDYDIEEKSRAIDEEKAREEEDAEAEMQLNINQESDEFRLPTKEELEEEALRPPDLSNLQRRTKEIVRVLSNFKVLRQDGATRKDYVEQLKKDICTYYGYNEFLMGALVEMFPVVELMELIEAYEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGIIFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKELPKILGVNAVDRVLLDAPCSGTGVISKDESVKTSKTLEDIQKCAQLQKELILAAIDMVDANSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREQRFHPSLEKTRRFYPHVQNMDGFFVAKLKKMSSSKPGAKSSEIAEKEEGIVTTLENEQENEKEKSNDGKKENGKATFESESKKTKKRKFPSKPVSGLKENGKESSESEPRKRTKRQFPSKEEISKAREEKRNALREKKRKGSKQHKQKVTKANGNT* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02475 625 MobiDBLite consensus disorder prediction 568 604 - -
Lapu6g02475 625 ProSitePatterns NOL1/NOP2/sun family signature. 367 378 IPR018314 GO:0003723|GO:0008168
Lapu6g02475 625 NCBIfam NOL1/NOP2/sun family putative RNA methylase 223 499 IPR011023 GO:0003723|GO:0006396|GO:0008757
Lapu6g02475 625 PRINTS RNA (C5-cytosine) methyltransferase signature 422 438 IPR023267 GO:0001510
Lapu6g02475 625 PRINTS RNA (C5-cytosine) methyltransferase signature 300 310 IPR023267 GO:0001510
Lapu6g02475 625 PRINTS RNA (C5-cytosine) methyltransferase signature 482 499 IPR023267 GO:0001510
Lapu6g02475 625 PRINTS RNA (C5-cytosine) methyltransferase signature 368 380 IPR023267 GO:0001510
Lapu6g02475 625 PRINTS RNA (C5-cytosine) methyltransferase signature 271 285 IPR023267 GO:0001510
Lapu6g02475 625 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 287 616 - -
Lapu6g02475 625 Pfam 16S rRNA methyltransferase RsmB/F 288 498 IPR001678 GO:0008168
Lapu6g02475 625 Coils Coil 589 612 - -
Lapu6g02475 625 Coils Coil 108 128 - -
Lapu6g02475 625 Gene3D Sun protein; domain 3 177 284 - -
Lapu6g02475 625 MobiDBLite consensus disorder prediction 1 130 - -
Lapu6g02475 625 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 94 502 IPR023267 GO:0001510
Lapu6g02475 625 FunFam Ribosomal RNA methyltransferase Nop2 178 284 - -
Lapu6g02475 625 MobiDBLite consensus disorder prediction 503 625 - -
Lapu6g02475 625 MobiDBLite consensus disorder prediction 1 19 - -
Lapu6g02475 625 MobiDBLite consensus disorder prediction 92 116 - -
Lapu6g02475 625 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 183 499 IPR029063 -
Lapu6g02475 625 Coils Coil 513 533 - -
Lapu6g02475 625 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 211 500 IPR001678 GO:0008168
Lapu6g02475 625 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 174 194 IPR023273 GO:0008168
Lapu6g02475 625 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 207 219 IPR023273 GO:0008168
Lapu6g02475 625 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 230 243 IPR023273 GO:0008168
Lapu6g02475 625 Gene3D Vaccinia Virus protein VP39 287 623 IPR029063 -
Lapu6g02475 625 MobiDBLite consensus disorder prediction 33 58 - -
Lapu6g02475 625 MobiDBLite consensus disorder prediction 509 554 - -
Lapu6g02475 625 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 207 284 IPR031341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02475 Lapu-Chr6 24650490 24657047 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02475 K14835 - gmx:100789776 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02475 6 24650490 24657047 Lapu6g02475 6 24650490 24657047 ECH