Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0620 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0622 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0623 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0624 . Acco05g0893 . Accr3g01994 . Adu07g00271 Aed3g2519 . Aev07g0229 . Ahy17g0383 Ahy11g0691 Aip07g00296 Aip01g00682 . . . Amo11g0519 . Apr9g1755 . Arst7g00431 . Bach3g00863 . . Bva12g02728 . Car02g02054 . Cca05g01949 . . Dere05g1358 Dod08g0272 . . Enph7g0013 . Glsi10g2022 . . Gma02g02746 Gma14g00191 . . . . Lal18g1574 Lal22g0072 Lal6g0071 . . . Lan2g1318 Lan2g1318 Lan2g1318 . . . . . . Lasa2g02250 . . . . . . . . . . . Mal8g0428 . Mepo7g02802 . Mesa17g04383 . Mibi08g0775 . Mtr5g3303 . . . Phco3g00245 . Prci2g2698 . Psa2g0332 . Pste8g00427 . . . Pte8g00051 . Pumo9g01878 . Pvu8g2781 . Rops9g00324 . Seca8g00312 . Spst8g00887 Ssu6g3486 . . Sto10g0474 . Tpr4g0051 . Trre9g04988 . Tsu05g03881 . Vian7g01190 . Vifa1g03312 . Vimu1g00429 . Viun8g02833 . Vivi7g02727 Vra6g0230 .
Vvi19g0625 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0626 . . . . Adu04g00403 . . . . . . . . . . . . . . . Arst4g00644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu6g01605 . Lasa1g01273 . . . . . . . . . . Lja6g2432 . . . . . . . . . . Phac6g02117 . Phco11g00821 . . . . . Pste2g02568 . . . . . Pumo2g00347 . Pvu6g1545 . Rops11g01057 . Seca6g04444 . Spst6g01200 . . . . . . . . . . . Vian6g01415 . Vifa1g09928 . Vimu2g01111 . Viun6g02273 . Vivi4g03279 . . .
Vvi19g0627 . . . . Adu04g00404 . . . . . . . . . . . . . . . Arst4g00645 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa1g01272 . . . . . . . . . . Lja6g2433 . . . . . . . . . . . . Phco11g00822 . . . . . . . Pte9g01301 . . . Pumo2g00346 . Pvu6g1544 . Rops11g01059 . Seca6g04443 . Spst6g01201 . . . . Sto10g0476 . . Trre3g01001 . . . Vian6g01414 . Vifa1g09926 . Vimu2g01112 . Viun6g02272 . Vivi4g03277 . . .
Vvi19g0628 . . . . Adu04g00406 . . . . . . . . . . . . . . . Arst4g00647 . Bach7g01222 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu6g01607 . Lasa1g01270 . . . . . . . . . . Lja6g2435 . . . . . . . . . . Phac6g02115 . Phco11g00824 . . . . . . . . . . . . . Pvu6g1542 . Rops11g01073 . Seca6g04442 . Spst6g01203 . . . . Sto10g0477 . . Trre3g01007 . . . Vian6g01412 . Vifa1g09922 . Vimu2g01114 . Viun6g02270 . Vivi1g00219 . . .
Vvi19g0629 . . . . . . . Aed4g2468 Aev07g0227 . Ahy17g0381 . Aip07g00294 . . . . . Apr2g0204 . . . Bach12g01445 . . . Bva12g02727 . . Car05g01019 . Cca09g01112 . . Dod08g0269 . . . . . . Gma18g00808 . . . . . . . . Lal6g0070 . . . . . . . . . . . . . . . . . . . . . . . . . Mepo3g04622 . Mesa9g01762 . . . . . . . Phco11g01983 . . . Psa5g4094 . Pste7g01316 . Pte9g01128 . . . Pumo1g00868 . Pvu6g0484 . . . Seca6g03023 . Spst6g02009 . . Ssu9g0969 . Sto5g1910 . . Trre5g01341 . . . Vian6g00390 . . . Vimu2g02509 . Viun6g00806 . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Adu Adu04g00406 Chr04 4786415 4787428 +
Arst Arst4g00647 Chr4 4765198 4766217 +
Bach Bach7g01222 Chr7 22643133 22644422 -
Lapu Lapu6g01607 Chr6 15950210 15951514 +
Lasa Lasa1g01270 Chr1 105828883 105830118 -
Lja Lja6g2435 Chr6 53171761 53173292 +
Phac Phac6g02115 Chr6 20920253 20922705 -
Phco Phco11g00824 Chr11 6060319 6061620 +
Pvu Pvu6g1542 Chr6 26124141 26125445 -
Rops Rops11g01073 Chr11 15798830 15807350 +
Seca Seca6g04442 Chr6 111971128 111979101 -
Spst Spst6g01203 Chr6 11014685 11015986 +
Trre Trre3g01007 Chr3 7185769 7189968 +
Vian Vian6g01412 Chr6 31654338 31655639 -
Vifa Vifa1g09922 Chr1 1622609894 1622611123 -
Vimu Vimu2g01114 Chr2 7380450 7381736 +
Viun Viun6g02270 Chr6 28263896 28265942 -
Vivi Vivi1g00219 Chr1 4274510 4292802 +
Lja Lja6g2433 Chr6 53159478 53161038 -
Lja Lja6g2432 Chr6 53149049 53157304 -
Vivi Vivi1g00219 Chr1 4274510 4292802 +
Adu Adu04g00404 Chr04 4769263 4770516 -
Arst Arst4g00645 Chr4 4747934 4749418 -
Lasa Lasa1g01272 Chr1 105902661 105903941 +
Phco Phco11g00822 Chr11 6047246 6048505 -
Pte Pte9g01301 Chr9 34430260 34431751 +
Pumo Pumo2g00346 Chr2 6014700 6016049 +
Pvu Pvu6g1544 Chr6 26135249 26136508 +
Rops Rops11g01059 Chr11 15592033 15593301 -
Seca Seca6g04443 Chr6 111988587 111989867 +
Spst Spst6g01201 Chr6 11001211 11002473 -
Trre Trre3g01001 Chr3 7155433 7156716 +
Vian Vian6g01414 Chr6 31674144 31675406 +
Vifa Vifa1g09926 Chr1 1623546364 1623547020 +
Vimu Vimu2g01112 Chr2 7367857 7369092 -
Viun Viun6g02272 Chr6 28280765 28282139 +
Vivi Vivi4g03277 Chr4 147285687 147287157 +
Adu Adu04g00403 Chr04 4765084 4766331 -
Arst Arst4g00644 Chr4 4739591 4740931 -
Lapu Lapu6g01605 Chr6 15936721 15937971 -
Lasa Lasa1g01273 Chr1 105923263 105924537 +
Phac Phac6g02117 Chr6 20946659 20957761 +
Phco Phco11g00821 Chr11 6036870 6038168 -
Pste Pste2g02568 Chr2 25890956 25895477 -
Pumo Pumo2g00347 Chr2 6029619 6030921 +
Pvu Pvu6g1545 Chr6 26148748 26150086 +
Rops Rops11g01057 Chr11 15578367 15579773 -
Seca Seca6g04444 Chr6 112002194 112006134 +
Spst Spst6g01200 Chr6 10994024 10995283 -
Vian Vian6g01415 Chr6 31680692 31681984 +
Vifa Vifa1g09928 Chr1 1623623641 1623624918 +
Vimu Vimu2g01111 Chr2 7362113 7363405 -
Viun Viun6g02273 Chr6 28288228 28289792 +
Vivi Vivi4g03279 Chr4 147311424 147312752 -
Vvi Vvi19g0620 Chr19 6778979 6779469 -
Vvi Vvi19g0621 Chr19 6781987 6782643 +
Vvi Vvi19g0622 Chr19 6798181 6798645 +
Vvi Vvi19g0623 Chr19 6801111 6803378 -
Vvi Vvi19g0624 Chr19 6806690 6809957 +
Acco Acco05g0893 Chr05 17253591 17274659 +
Accr Accr3g01994 Chr3 29826289 29847404 -
Adu Adu07g00271 Chr07 2462076 2467877 -
Aed Aed3g2519 Chr3 27554864 27559836 +
Aev Aev07g0229 Chr07 1280208 1284284 -
Ahy Ahy17g0383 Chr17 3716556 3722356 -
Ahy Ahy11g0691 Chr11 11602456 11613421 -
Aip Aip07g00296 Chr07 2704910 2709309 -
Aip Aip01g00682 Chr01 10949723 10960728 -
Amo Amo11g0519 Chr11 9019730 9025544 -
Apr Apr9g1755 Chr9 26612088 26618917 +
Arst Arst7g00431 Chr7 2612995 2618757 -
Bach Bach3g00863 Chr3 19430589 19436362 +
Bva Bva12g02728 Chr12 19904199 19910891 -
Car Car02g02054 Chr02 50985509 50991848 +
Cca Cca05g01949 Chr05 39299132 39306735 +
Dere Dere05g1358 Chr05 22244737 22252203 +
Dod Dod08g0272 Chr08 2911352 2917997 -
Enph Enph7g0013 Chr7 691379 706295 +
Glsi Glsi10g2022 Chr10 14407256 14414050 -
Gma Gma02g02746 Chr02 53133268 53139428 +
Gma Gma14g00191 Chr14 1597220 1602809 -
Lal Lal18g1574 Chr18 17363485 17370664 +
Lal Lal22g0072 Chr22 424933 431372 -
Lal Lal6g0071 Chr6 425228 430384 -
Lan Lan2g1318 Chr2 24028226 24035345 +
Lan Lan2g1318 Chr2 24028226 24035345 +
Lan Lan2g1318 Chr2 24028226 24035345 +
Lasa Lasa2g02250 Chr2 497215290 497220163 +
Mal Mal8g0428 Chr8 6563547 6570626 -
Mepo Mepo7g02802 Chr7 39005859 39014307 +
Mesa Mesa17g04383 Chr17 74324427 74328630 +
Mibi Mibi08g0775 Chr08 17127459 17142488 +
Mtr Mtr5g3303 Chr5 41918874 41926056 +
Phco Phco3g00245 Chr3 1769845 1775568 -
Prci Prci2g2698 Chr2 25640139 25652710 +
Psa Psa2g0332 Chr2 12698369 12703856 -
Pste Pste8g00427 Chr8 2245996 2261383 -
Pte Pte8g00051 Chr8 1177828 1184232 -
Pumo Pumo9g01878 Chr9 47910960 47917561 -
Pvu Pvu8g2781 Chr8 57963811 57970314 +
Rops Rops9g00324 Chr9 4029649 4036673 -
Seca Seca8g00312 Chr8 3671388 3678060 -
Spst Spst8g00887 Chr8 7843663 7851559 +
Ssu Ssu6g3486 Chr6 77748866 77755118 +
Sto Sto10g0474 Chr10 3853783 3857308 -
Tpr Tpr4g0051 Chr4 493458 499359 +
Trre Trre9g04988 Chr9 55813787 55818955 +
Tsu Tsu05g03881 Chr05 49852771 49857979 +
Vian Vian7g01190 Chr7 20178881 20184782 -
Vifa Vifa1g03312 Chr1 515783467 515788791 +
Vimu Vimu1g00429 Chr1 2598844 2604746 -
Viun Viun8g02833 Chr8 36518751 36524503 +
Vivi Vivi7g02727 Chr7 91290201 91295770 -
Vra Vra6g0230 Chr6 1714255 1720903 -
Vvi Vvi19g0625 Chr19 6812427 6812833 -
Vvi Vvi19g0626 Chr19 6813688 6814653 +
Adu Adu04g00403 Chr04 4765084 4766331 -
Arst Arst4g00644 Chr4 4739591 4740931 -
Lapu Lapu6g01605 Chr6 15936721 15937971 -
Lasa Lasa1g01273 Chr1 105923263 105924537 +
Lja Lja6g2432 Chr6 53149049 53157304 -
Phac Phac6g02117 Chr6 20946659 20957761 +
Phco Phco11g00821 Chr11 6036870 6038168 -
Pste Pste2g02568 Chr2 25890956 25895477 -
Pumo Pumo2g00347 Chr2 6029619 6030921 +
Pvu Pvu6g1545 Chr6 26148748 26150086 +
Rops Rops11g01057 Chr11 15578367 15579773 -
Seca Seca6g04444 Chr6 112002194 112006134 +
Spst Spst6g01200 Chr6 10994024 10995283 -
Vian Vian6g01415 Chr6 31680692 31681984 +
Vifa Vifa1g09928 Chr1 1623623641 1623624918 +
Vimu Vimu2g01111 Chr2 7362113 7363405 -
Viun Viun6g02273 Chr6 28288228 28289792 +
Vivi Vivi4g03279 Chr4 147311424 147312752 -
Vvi Vvi19g0627 Chr19 6831435 6832706 +
Adu Adu04g00404 Chr04 4769263 4770516 -
Arst Arst4g00645 Chr4 4747934 4749418 -
Lasa Lasa1g01272 Chr1 105902661 105903941 +
Lja Lja6g2433 Chr6 53159478 53161038 -
Phco Phco11g00822 Chr11 6047246 6048505 -
Pte Pte9g01301 Chr9 34430260 34431751 +
Pumo Pumo2g00346 Chr2 6014700 6016049 +
Pvu Pvu6g1544 Chr6 26135249 26136508 +
Rops Rops11g01059 Chr11 15592033 15593301 -
Seca Seca6g04443 Chr6 111988587 111989867 +
Spst Spst6g01201 Chr6 11001211 11002473 -
Sto Sto10g0476 Chr10 3872817 3880268 -
Trre Trre3g01001 Chr3 7155433 7156716 +
Vian Vian6g01414 Chr6 31674144 31675406 +
Vifa Vifa1g09926 Chr1 1623546364 1623547020 +
Vimu Vimu2g01112 Chr2 7367857 7369092 -
Viun Viun6g02272 Chr6 28280765 28282139 +
Vivi Vivi4g03277 Chr4 147285687 147287157 +
Vvi Vvi19g0628 Chr19 6842061 6843137 +
Adu Adu04g00406 Chr04 4786415 4787428 +
Arst Arst4g00647 Chr4 4765198 4766217 +
Bach Bach7g01222 Chr7 22643133 22644422 -
Lapu Lapu6g01607 Chr6 15950210 15951514 +
Lasa Lasa1g01270 Chr1 105828883 105830118 -
Lja Lja6g2435 Chr6 53171761 53173292 +
Phac Phac6g02115 Chr6 20920253 20922705 -
Phco Phco11g00824 Chr11 6060319 6061620 +
Pvu Pvu6g1542 Chr6 26124141 26125445 -
Rops Rops11g01073 Chr11 15798830 15807350 +
Seca Seca6g04442 Chr6 111971128 111979101 -
Spst Spst6g01203 Chr6 11014685 11015986 +
Sto Sto10g0477 Chr10 3891136 3892401 +
Trre Trre3g01007 Chr3 7185769 7189968 +
Vian Vian6g01412 Chr6 31654338 31655639 -
Vifa Vifa1g09922 Chr1 1622609894 1622611123 -
Vimu Vimu2g01114 Chr2 7380450 7381736 +
Viun Viun6g02270 Chr6 28263896 28265942 -
Vivi Vivi1g00219 Chr1 4274510 4292802 +
Vvi Vvi19g0629 Chr19 6844873 6853764 -
Aed Aed4g2468 Chr4 26799240 26811588 +
Aev Aev07g0227 Chr07 1271292 1276895 +
Ahy Ahy17g0381 Chr17 3707649 3713007 +
Aip Aip07g00294 Chr07 2695819 2700823 +
Apr Apr2g0204 Chr2 2610817 2620107 -
Bach Bach12g01445 Chr12 10223899 10234433 +
Bva Bva12g02727 Chr12 19897156 19903621 +
Car Car05g01019 Chr05 50938553 50947206 -
Cca Cca09g01112 Chr09 32177543 32188618 -
Dod Dod08g0269 Chr08 2902409 2904274 +
Gma Gma18g00808 Chr18 9077761 9091805 +
Lal Lal6g0070 Chr6 416959 424138 +
Mepo Mepo3g04622 Chr3 57388364 57396466 -
Mesa Mesa9g01762 Chr9 39879222 39888071 -
Phco Phco11g01983 Chr11 16164075 16171822 +
Psa Psa5g4094 Chr5 324703255 324709157 +
Pste Pste7g01316 Chr7 11887684 11896918 -
Pte Pte9g01128 Chr9 33037470 33043916 -
Pumo Pumo1g00868 Chr1 13199367 13211661 +
Pvu Pvu6g0484 Chr6 15992734 16000654 -
Seca Seca6g03023 Chr6 96325602 96330131 +
Spst Spst6g02009 Chr6 19915451 19923458 +
Ssu Ssu9g0969 Chr9 39572218 39579117 -
Sto Sto5g1910 Chr5 14203178 14211740 +
Trre Trre5g01341 Chr5 9397840 9404434 +
Vian Vian6g00390 Chr6 16797119 16815052 -
Vimu Vimu2g02509 Chr2 21061789 21077388 +
Viun Viun6g00806 Chr6 17821837 17834428 -