Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04988 ATGTTTGGTGTTGTAAGACGAAGGGTTGCTTCTGGAGGCACATCTTCGTTGCTTGGTCAGTCAGGGCTGAAAATCAGGTCTGGTCCTGCTAGAGTTTCTTCCATTTTCGAAAAAGAGATTGCAGTAAGCTCAGGAGGATGTTGGAATATCCGCAATTTCTGTCATATAACACCTGGACGCTGGATTAATTCAAAACCAATAAGGGACATTTTTCATCAAGAGGCTTCGATTCAAACATGGAAGCGTTCATTTTCTTCGGATAGTGGAGATAATGTTGATGTTGTGGTCCCTCCATTGGCTGAATCCATCGAGGATGGGACTCTTGCAAAATTTCTGAAGAGGCCTGGTGACAGGGTTAATGTTGATGAACCAATTGCTCAAATTGAAACAGATAAGGTGACAATTGATGTTACGAGTCCTGAGTCAGGTGTGATTCTGAAGCTTCTAGCCAATGAAGGAGATACAGTTGAGCCAGGTAACAAGATAGCAATAATTTCAAGGTCTGCTGATGCTACAACTCACGTTGTGCCATCTGAGAATGCACCTGAGAAACCTGCTCCTAAGCCCACTCCAAAGGCTAGTGAGCCAGAGAAGAAAAGTGAGCCAGAGAAGAAAACTCCTAAAGTTGAAATAGAGAAGCCAAAAGCACATACTCCACCAAGCTCTCCATCTGAGCCACAACTTCCTCCTAAGGATAGAGAAAGCCGAGTTCCTATGACAAGGCTTCGGAAGCGGGTTGCTATACGATTGAAGGATTCCCAAAACACATATGCTATGCTGACAACCTTCAATGAAGTTGATATGACTAATTTGATGAAGCTCCGTGCTGATCATAAGGATGCTTTTGTTGAAAAGCATGGAGTCAAATTGGGACTTATGTCCGGGTTTATCAAAGCTGCTGTCAATGCACTTCAATATCAACCGATTATAAATGCAGTCATTGACGGGGATGATATTATATACAGGGATTACATCGATATCAGCATAGCTGTTGGAACTCCAAAGGGACTTGTTGTGCCTGTTATCCGCAATGTTGACACAATGAACTTCGCGGATATAGAAAAACAGATCAACACTTTTGCAAAGAAGGCTAATGCTGGAACTTTGTCAATTGATGAGATGGCTGGAGGCACTCTTACAATATCAAATGGTGGTGTTTATGGCAGTCTTTTGAGTACACCTATTATCAACCCCCCTCAGTCGGCAATCGTGGGTATGCATTCCATAATGACCCGTCCAATGGTTGTTGGAGGAGTTGTTGTTCCAAGACCAATGATGAACCTTGCTCTAACATATGACCATAGAATCATTGATGGAAGAGAGGCAGTGTTCTTTTTGAGACGCATCAAAGATTGCGTGGAGGACCCTCGCAGGCTTTTGCTCGACATATAA 1392 0.431 MFGVVRRRVASGGTSSLLGQSGLKIRSGPARVSSIFEKEIAVSSGGCWNIRNFCHITPGRWINSKPIRDIFHQEASIQTWKRSFSSDSGDNVDVVVPPLAESIEDGTLAKFLKRPGDRVNVDEPIAQIETDKVTIDVTSPESGVILKLLANEGDTVEPGNKIAIISRSADATTHVVPSENAPEKPAPKPTPKASEPEKKSEPEKKTPKVEIEKPKAHTPPSSPSEPQLPPKDRESRVPMTRLRKRVAIRLKDSQNTYAMLTTFNEVDMTNLMKLRADHKDAFVEKHGVKLGLMSGFIKAAVNALQYQPIINAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNVDTMNFADIEKQINTFAKKANAGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAIVGMHSIMTRPMVVGGVVVPRPMMNLALTYDHRIIDGREAVFFLRRIKDCVEDPRRLLLDI 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04988 463 SUPERFAMILY CoA-dependent acyltransferases 233 462 - -
Trre9g04988 463 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 233 461 IPR001078 GO:0016746
Trre9g04988 463 FunFam Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial 226 461 - -
Trre9g04988 463 CDD lipoyl_domain 92 165 - -
Trre9g04988 463 NCBIfam dihydrolipoyllysine-residue succinyltransferase 204 462 IPR006255 GO:0004149|GO:0006099|GO:0045252
Trre9g04988 463 Pfam Biotin-requiring enzyme 93 165 IPR000089 -
Trre9g04988 463 MobiDBLite consensus disorder prediction 190 215 - -
Trre9g04988 463 ProSiteProfiles Biotinyl/lipoyl domain profile. 91 166 IPR000089 -
Trre9g04988 463 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 68 462 - -
Trre9g04988 463 SUPERFAMILY Single hybrid motif 92 181 IPR011053 -
Trre9g04988 463 MobiDBLite consensus disorder prediction 170 240 - -
Trre9g04988 463 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 116 145 IPR003016 -
Trre9g04988 463 Gene3D - 219 459 IPR023213 -
Trre9g04988 463 Gene3D - 90 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04988 Trre-Chr9 55813787 55818955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04988 68 461 Acyl Lipid Metabolism Gene Families AT1G54220 28.755 1.24e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04988 K00658 - gmx:100799149 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04988 9 55813787 55818955 Trre9g04988 9 55813787 55818955 ECH