Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00808 ATGGAGGCGCCGCCGCCATTTGCTTCTTCTTCCTCTTCCTCTCTCTTTTCTCTTCGCAACAAGCCACTCTCATCCCCCACAATCACCCATTTCGGCAACACCAAACCATCGAAGAGTTTCTCGGTTCGTGCCTCCTCTTCTAGGGATTCTGTTGTGACTTTGCTTGATTACGGTGCTGGCAATGTTCGGAGTGTCAGGAATGCAATCAGATTCCTCGGGTTTGAGATCAAAGATGTGCAAACTCCGCAAGATATTCTGAATGCAAGTAGGTTAGTTTTTCCTGGCGTTGGAGCATTTGCTGCTGCTATGGAGGTGTTAAGCAAAACTGGAATGGATGAAGCACTATGTTCATATATTGACAAGGATCGTCCATTTTTGGGCATTTGTCTTGGACTTCAACTACTTTTTGAATCTAGTGAGGAGAATGGACCAGTAAAAGGTCTTGGCTTAATACCCGGAACTGTTGGGCGATTTGACTCATCAAATGGTTTTAGAGTACCACATATTGGCTGGAATGCTTTACAAATCACCGAGGACTCGGGAATTTTGGATGATGTTGGAAATCACCATGTCTATTTTGTGCACTCTTATCGTGCCATGCCTTCAGATGACAACAATGAGTGGATATCCTCCACCTGTGACTATGGTGACAAATTTATAGCATCTATTAGAAGAGGAAATGTGCATGCAGTTCAATTCCATCCAGAGAAGAGTGGAGATGTTGGCCTCTCTATTTTGGGAAGATTCTTGAATCCAAAGTCAAACATGGCAAAGAAGCCTGGGGAAGGCAAAGCTTCAAAACTTGCAAAAAGGGTGATTGCTTGTCTCGATGTGAGAACAAATGATAAGGGGGACCTTGTTGTAACCAAAGGAGACCAGTATGATGTAAGAGAACATACAAAAGAGAATGAGGTAAGAAATCTTGGCAAGCCAGTTGATCTTGCTGGACAGTACTATAAAGATGGAGCTGATGAGGTCAGCTTTCTAAATATTACTGGATTTCGCGACTTCCCTCTTGGTGATTTACCGATGCTGCAGGTATTGCGATACACATCAGAAAATGTTTTTGTACCCTTAACAGTTGGGGGAGGAATTAGAGATTTCACAGATTCAACTGGGAGGTACTATTCTAGTTTGGAAGTTGCTTCTGAATACTTTAGGTCTGGGGCTGATAAGATTTCCATTGGAAGTGATGCAGTTTATGCTGCAGAAGAATATTTAAAAACCGGAGTAAAGACTGGGAAGACCAGCTTGGAGCAGATATCAAGAGTTTATGGGAATCAGgcagtggttgttagtatcgatccccgtagagtgtatgtaaaggatcctaatgatgtgcaattgaagaccataagggtttcaagtccaggttcaaatggagaggaatatgcatggtatcaatgtacagttaatgggggacgagagggccggccaattggtgcttatgaactagcaaaagcagttgaagagcttggtgctggtgaaatactacttaattgcattgattgcgacggtcaagggaaaggatttgatgtagatttaattaagttgatatcagatgctgtaagtatccctgttatcgcaagtagcggtgctggtgctcctgaacacttctctgaggtgttctataaaacaaatgcatcagcagcacttgctgctggcatttttcacaggaaagaggtgcctattcagtcggtaaaagagcatttgttgaaggaaggcatagaagttcgaatatga 1743 0.3161 MEAPPPFASSSSSSLFSLRNKPLSSPTITHFGNTKPSKSFSVRASSSRDSVVTLLDYGAGNVRSVRNAIRFLGFEIKDVQTPQDILNASRLVFPGVGAFAAAMEVLSKTGMDEALCSYIDKDRPFLGICLGLQLLFESSEENGPVKGLGLIPGTVGRFDSSNGFRVPHIGWNALQITEDSGILDDVGNHHVYFVHSYRAMPSDDNNEWISSTCDYGDKFIASIRRGNVHAVQFHPEKSGDVGLSILGRFLNPKSNMAKKPGEGKASKLAKRVIACLDVRTNDKGDLVVTKGDQYDVREHTKENEVRNLGKPVDLAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFTDSTGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYLKTGVKTGKTSLEQISRVYGNQAVVVSIDPRRVYVKDPNDVQLKTIRVSSPGSNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDVDLIKLISDAVSIPVIASSGAGAPEHFSEVFYKTNASAALAAGIFHRKEVPIQSVKEHLLKEGIEVRI 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00808 580 Gene3D - 47 272 IPR029062 -
Gma18g00808 580 Pfam Glutamine amidotransferase class-I 54 240 IPR017926 -
Gma18g00808 580 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE HISHF 63 580 - -
Gma18g00808 580 TIGRFAM hisF: imidazoleglycerol phosphate synthase, cyclase subunit 268 579 IPR004651 GO:0000105|GO:0000107
Gma18g00808 580 PIRSF IGPS_HisHF 49 580 IPR014640 GO:0000105|GO:0000107|GO:0016763|GO:0016833
Gma18g00808 580 CDD HisF 270 574 IPR004651 GO:0000105|GO:0000107
Gma18g00808 580 Gene3D Aldolase class I 273 580 IPR013785 -
Gma18g00808 580 CDD GATase1_IGP_Synthase 52 250 IPR010139 GO:0000105|GO:0016763
Gma18g00808 580 Pfam Histidine biosynthesis protein 271 562 IPR006062 GO:0000105
Gma18g00808 580 SUPERFAMILY Ribulose-phoshate binding barrel 267 579 IPR011060 -
Gma18g00808 580 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 51 259 - -
Gma18g00808 580 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 63 580 - -
Gma18g00808 580 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 51 252 IPR010139 GO:0000105|GO:0016763
Gma18g00808 580 SUPERFAMILY Class I glutamine amidotransferase-like 51 251 IPR029062 -
Gma18g00808 580 TIGRFAM IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 52 250 IPR010139 GO:0000105|GO:0016763
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00808 Gma-Chr18 9077761 9091805 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00808 K01663 - gmx:100500353 1120.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00808 18 9077761 9091805 Gma18g00808 18 9077761 9091805 ECH