Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01341 ATGGAGGCGCCGCCATTGACTCCATCATTTTCCCCTACTTCTCTTCTCATTCGTCACAAAAATCCATCCTCCGTCACTACATTCTCTCGCTCCCCCAATATCAAAAACCGAACCAAATTCTCAATTCGTGCTTCATCTTCTTCTGATTCTGTTGTGACTTTACTTGATTATGGTGCTGGCAATGTTCGGAGTGTTAGGAATGCTATCAAATTCCTCGGGTTTGAAATCAAAGATGTTCAAACCCCAGAAGATATTTTGAATGCAAGCCGTTTAGTCTTTCCGGGTGTTGGAGCATTTGCACCTGCTATGGAGGTGTTAAGTAAAACTGGGATGGGTGAAGCACTATGTTCATATATTGAAAAGGATCGCCCATTTTTAGGCATTTGTCTTGGACTTCAATTGCTTTTTGAATCCAGTGAGGAGAAAGGAACAATAAAAGGTCTTGGACTAATTCCTGGAACGGTTGGGCGATTTGATTCATCAAATGGTTTTAGAGTGCCACATATTGGATGGAACGCTTTACAAATCACAAAGGACTCAGAAATTTTGGATGATGTTGGAAACCGCCATGTCTATTTTGTGCACTCTTACCGTGCCATGCCTTCAGATGATAACAAAGAGTGGATATCCTCTACCTGTGATTATGGTGATAAATTTATAGCATCTATTAAAAGAGGAAATGTGCATGCAGTTCAGTTCCATCCAGAGAAGAGTGGAGATGTTGGTCTCTCTATTTTGAGAAGATTCTTGTATCCGAAATCAAATGTGGCAAAGAAGACTGATGAAGGCAAAGCTTCAAAACTAGCAAAAAGGGTGATTGCATGTCTTGATGTGAGAGCAAATGATAATGGGGACCTTGTTGTAACCAAAGGAGACCAGTATGATGTAAGAGAAAATACAAAAGAGAATGAGGTTAGGAATCTTGGCAAGCCAGTTGAGCTTGCTGAACAGTACTATAAAGATGGAGCTGATGAGGTCAGCTTTCTAAACATAACTGGATTTCGCGACTTCCCTCTTGGCGATTTACCGATGTTGCAGGTATTGCGATACACATCAGAAAATGTTTTTGTACCCTTAACAGTTGGTGGTGGAATTAGAGATTTTACAGATTCACAAGGAAGGCACTATTCTAGTTTGGAAGTAGCCGCAGAATATTTTAGGTCTGGTGCTGACAAGATATCTATCGGAAGTGATGCGGTTTATGCTGCTGAAGAATATTTAAAAACTGGAGTAAAGACGGGGAAGACCAGCTTAGAGCAGATATCAAGAGTTTACGGGAATCAGGCAGTGGTTGTTAGTATTGATCCCCGTAGAGTTTACATAAACAATCCAAATGACGTGCAATTCCAGACCATAAAAGTTTCAAGTCCAGGTCCAAATGGAGAAGAATACGCCTGGTATCAGTGTACTGTTAATGGTGGGCGTGAAGGCCGGCCTATTGGTGCTTATGAACTAGCAAAAGCTGTTGAAGAACTTGGTGCTGGAGAAATACTATTAAACTGCATCGATTGTGATGGTCAAGGAAAAGGATTTGATGTGGATTTAATTAAGTTAATATCAGATGCTGTAAGTATCCCTGTGATTGCTAGTAGCGGTGCTGGTGTTCCTGACCACTTTTCCGAAGTGTTTACTAAAACCAATGCATCCGCTGCACTTGCCGCAGGCATTTTTCACAGAAAAGAGGTACCTATTCAGTCTGTAAAAGAACATTTGTTGAAGGAAGGCATAGAAGTCAGAATCTGA 1743 0.4102 MEAPPLTPSFSPTSLLIRHKNPSSVTTFSRSPNIKNRTKFSIRASSSSDSVVTLLDYGAGNVRSVRNAIKFLGFEIKDVQTPEDILNASRLVFPGVGAFAPAMEVLSKTGMGEALCSYIEKDRPFLGICLGLQLLFESSEEKGTIKGLGLIPGTVGRFDSSNGFRVPHIGWNALQITKDSEILDDVGNRHVYFVHSYRAMPSDDNKEWISSTCDYGDKFIASIKRGNVHAVQFHPEKSGDVGLSILRRFLYPKSNVAKKTDEGKASKLAKRVIACLDVRANDNGDLVVTKGDQYDVRENTKENEVRNLGKPVELAEQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFTDSQGRHYSSLEVAAEYFRSGADKISIGSDAVYAAEEYLKTGVKTGKTSLEQISRVYGNQAVVVSIDPRRVYINNPNDVQFQTIKVSSPGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDVDLIKLISDAVSIPVIASSGAGVPDHFSEVFTKTNASAALAAGIFHRKEVPIQSVKEHLLKEGIEVRI 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01341 580 Pfam Histidine biosynthesis protein 271 562 IPR006062 GO:0000105
Trre5g01341 580 CDD HisF 270 574 IPR004651 GO:0000105|GO:0000107
Trre5g01341 580 Gene3D - 47 272 IPR029062 -
Trre5g01341 580 SUPERFAMILY Ribulose-phoshate binding barrel 267 579 IPR011060 -
Trre5g01341 580 Gene3D Aldolase class I 273 580 IPR013785 -
Trre5g01341 580 SUPERFAMILY Class I glutamine amidotransferase-like 51 251 IPR029062 -
Trre5g01341 580 Pfam Glutamine amidotransferase class-I 54 249 IPR017926 -
Trre5g01341 580 NCBIfam imidazole glycerol phosphate synthase subunit HisF 268 579 IPR004651 GO:0000105|GO:0000107
Trre5g01341 580 ProSiteProfiles CobBQ-type GATase domain profile. 43 242 - -
Trre5g01341 580 FunFam Imidazole glycerol phosphate synthase hisHF 270 580 - -
Trre5g01341 580 CDD GATase1_IGP_Synthase 52 250 IPR010139 GO:0000105|GO:0016763
Trre5g01341 580 FunFam Imidazole glycerol phosphate synthase hisHF 47 272 - -
Trre5g01341 580 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 264 580 - -
Trre5g01341 580 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 51 259 - -
Trre5g01341 580 NCBIfam imidazole glycerol phosphate synthase subunit HisH 52 250 IPR010139 GO:0000105|GO:0016763
Trre5g01341 580 PIRSF IGPS_HisHF 49 580 IPR014640 GO:0000105|GO:0000107|GO:0016763|GO:0016833
Trre5g01341 580 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 51 252 IPR010139 GO:0000105|GO:0016763
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01341 Trre-Chr5 9397840 9404434 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01341 K01663 - gmx:100500353 1006.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01341 5 9397840 9404434 Trre5g01341 5 9397840 9404434 ECH