Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3486 ATGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGGTTGCTAGGTCAGTCATTTCAGAAAATTCGGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCGTTGTGGAAAAAGAGATTGCATTTCATTCAGGAGGATGTGGATTGGTCCGGAACTTCTGTCGTATAACACCTGgATGCTGGATTAATGCAAAGCCTATGAGGGTGGTTTTTCATCCAGAGGCAACCATGCGAACATGGGGGCGTCCATTTTCTTCAGAGAGTGGAGATTCGGTTGATGTTGTGGTCCCTCCTCTGGCTGAATCTATCTCTGATGGAACTCTGGCAAAATTTTTGAAGAGGCCTGGTGACAGGGTTAATGTTGATGAGCCAATTGCTCAAATTGAAACAGATAAGgTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTGAAGCTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATCATTTCAAGGTCTGCTGACGCAACTCATGTTGCCCCATCTGAGACTACATCTGAGAAAGCTGCTCCTAAGCCAACCCAAAAGGTTAGCGAGGAGAAGAAAGCACCCAAAGTTGAAACTGCTCCTGCTAGAGACAAGCCCAAAGCACCTCCTGCTGCACTGAATTCTCCCACCGAGCCCCAGCTTCCTcctaaagaaagagaaagacgAGTTCCTATGACAAGGCTTCGGAAACGAGTTGCTACACGGCTGAAAGATTCCCAAAACACATTCGCTATGCTGACAACCTTCAATGAAGTTGATATGACTAATTTGATGAAGCTCCGTGCTGATTATAAGGATGCTTTTGTTGAAAAGCATGGAGTCAAACTGGGGCTTATGTCTGGCTTTGTCAAAGCTGCTGTCAATGCACTCCAACATCAGCCGATTGTCAATGCAGTCATTGATGGGGATGATATTATATACAGAGATTATATAGATATCAGCATAGCTGTTGGTACTCCGAAGGGCCTTGTTGTGCCGGTTATTCGCAATGCTGATACAATGAACTTTGCTGATATAGAAAAGCAGATCAATGCTTTTGCAAAGAAGGCAAATGATGGAACCTTGTCTATTGATGAGATGGCTGGAGGCACTCTTACAATATCCAATGGTGGTGTTTATGGAAGCCTTTTGAGTACCCCTATTATCAACCCCCCTCAGTCGGCAATCTTGGGTATGCATTCCATAGTGAGCCGTCCGATGGTTGTTGGAGGAAATATTGTCCCAAGACCAATGATGTACGTTGCTCTAACATATGACCATAGAGTTATTGATGGAAGAGAGGCAGTGTTCTTTCTGCGACGCATCAAAGATATTGTGGAGGATCCTCGCAGGCTTCTGCTTGACATATGA 1395 0.4466 MFGVVRRRVASGSPSPWLLGQSFQKIRSGPSVSARASSVVEKEIAFHSGGCGLVRNFCRITPGCWINAKPMRVVFHPEATMRTWGRPFSSESGDSVDVVVPPLAESISDGTLAKFLKRPGDRVNVDEPIAQIETDKVTIDVSSPESGVILKLLANEGDTVEPGNKIAIISRSADATHVAPSETTSEKAAPKPTQKVSEEKKAPKVETAPARDKPKAPPAALNSPTEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRADYKDAFVEKHGVKLGLMSGFVKAAVNALQHQPIVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADTMNFADIEKQINAFAKKANDGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGNIVPRPMMYVALTYDHRVIDGREAVFFLRRIKDIVEDPRRLLLDI 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3486 464 Pfam Biotin-requiring enzyme 97 169 IPR000089 -
Ssu6g3486 464 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 208 463 IPR006255 GO:0004149|GO:0006099|GO:0045252
Ssu6g3486 464 SUPERFAMILY Single hybrid motif 96 187 IPR011053 -
Ssu6g3486 464 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 234 462 IPR001078 GO:0016746
Ssu6g3486 464 SUPERFAMILY CoA-dependent acyltransferases 234 463 - -
Ssu6g3486 464 CDD lipoyl_domain 96 169 - -
Ssu6g3486 464 Gene3D - 94 172 - -
Ssu6g3486 464 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 1 464 - -
Ssu6g3486 464 MobiDBLite consensus disorder prediction 172 243 - -
Ssu6g3486 464 ProSiteProfiles Biotinyl/lipoyl domain profile. 95 170 IPR000089 -
Ssu6g3486 464 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 1 464 - -
Ssu6g3486 464 Gene3D - 220 460 IPR023213 -
Ssu6g3486 464 MobiDBLite consensus disorder prediction 192 211 - -
Ssu6g3486 464 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 120 149 IPR003016 -
Ssu6g3486 464 MobiDBLite consensus disorder prediction 176 191 - -
Ssu6g3486 464 MobiDBLite consensus disorder prediction 229 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3486 Ssu-Chr6 77748866 77755118 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3486 72 462 Acyl Lipid Metabolism Gene Families AT1G54220 28.603 1.05e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3486 K00658 - gmx:100799149 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3486 6 77748866 77755118 Ssu6g3486 6 77748866 77755118 ECH