Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02509 ATGGAGGCGCCGTCTTTTGCTTATTCTGCTTCCTCTTCCTCTCTCCTCTCTCTTCGGAAAACGCCACTCTCACCTCCGAGATTATCCTGTTTCGGCAATACAAAACAAAGAAACTTCTCAGTTCGTGCCTCCTCTTCTGGGGATTCTGTTGTTACTTTGCTTGATTACGGTGCTGGCAATGTTCGGAGTGTCAGGAATGCAATCAGATTCCTCGGGTTTGAAATCAAAGATGTACAAACCCCGCAAGATATTTTGAATGCAAGTCGGTTAGTTTTTCCTGGGGTTGGAGCATTTGCTGCCGCCATGGAGGTGTTAAGCAAAACTGGAATGGATGAAGCATTATGTTCATATATTGAAAAAGATCGTCCATTTTTGGGGATTTGTCTAGGACTTCAGCTACTTTTTGAATCTAGTGAGGAGAATGGACCAGGCTCAAATTCCAACCTGTTGCCCATGACTCAGCTTCCATTAACTTTGGCAAGCTCCTCGTCTGATCGCACCGCTCTTATCTGCGCCTTCATTCTATCAACCGCCATTGGCTTCCCCCCACACGATTCCGGCAGCGCAGCGATACGACAGTTTCTTGAAACGGCAGTAAAAGGTCTTGGCTTGATACCTGGAACTGTTGGGCGATTTGACTCATCAAATGGTTTTAGAGTACCACATATTGGCTGGAATGCTTTACAAATCACGAAGGACTCAGGAATTTTGGATGATGTCGGAAATGACCATGTCTATTTTGTGCACTCTTATCGTGCCATGCCTTCAGATGACAACAGTGAGTGGATATCCTCCACATGTGACTATGGTGACAAATTTATAGCATCTATTACAAGAGGAAATGTTCATGCAGTTCAATTCCACCCAGAGAAGAGTGGAGGCAAATGTTGGTCTCTCTATTTTGAGAAGATTCTTGAATCCAAAGTCAAACATGACAAAGGTGGCCTTGATACCATTCTGTGCACTTCTTCTGTTTCACAGAAGCCTGGGGAAGTCAAAGCTTCAAAACTTGCAAAGAGGGTGATTGCTTGTCTTGATGTGAGAGCAAACGATAAAGGGGACCTTGTTGTAACCAAAGGAGATCAGTATGATGTAAGAGAACATACAAATGAGAACGAGGTAAGGAATCTTGGCAAGCCAGTTGATCTTGCTGGACAGTACTATAAAGATGGAGCTGATGAGGTCAGCTTTCTAAACATTACTGGATTTCGGGACTTCCCTCTTGGTGATTTACCTATGCTGCAGGTATTACGATACACATCAGAAAATGTTTTTGTACCGTTAACTGTCGGTGGAGGAATTAGAGATTTCACAGATTCAACCGGAAGGTACTATTCTAGTTTGGAAGTTGCTTCAGAATACTTTAGGTCTGGGGCTGATAAGATTTCCATTGGAAGTGATGCAGTTTATGCTGCGGAAGAATATTTAAGAACCGGAGTAAAAACTGGAAAGACCAGCTTGGAGCAGATATCAAGAGTTTATGGGAATCAGGCAGTGGTTGTTAGTATTGATCCCCGTAGAGTGTATGTAAAGGATCCTAATGATGTGCAATTGAAGACCGTAAGGGTTTCAAATCCAGGTCCAAATGGAGAAGAGTATGCATGGTATCAATGTACAGTTAATGGAGGGAGAGAAGGCCGACCAATTGGTGCCTATGAACTAGCAAAAGCAGTTGAAGAGCTTGGCGCTGGAGAAATACTACTTAATTGCATCGATTGTGATGGTCAAGGGAAAGGATTTGATGTAGATTTAATTAAGTTGATATCAGACGCTGTAAGTATCCCTGTGATTGCAAGTAGTGGTGCTGGCGCTCCTGCACACTTTTCTGAGGTGTTCAATAAAACAAATGCATCAGCAGCACTTGCTGCTGGCATTTTTCACAGAAAAGAGGTATTACTTCTCTTTCATTATTTTCTTAAGAGCTGA 1926 0.4294 MEAPSFAYSASSSSLLSLRKTPLSPPRLSCFGNTKQRNFSVRASSSGDSVVTLLDYGAGNVRSVRNAIRFLGFEIKDVQTPQDILNASRLVFPGVGAFAAAMEVLSKTGMDEALCSYIEKDRPFLGICLGLQLLFESSEENGPGSNSNLLPMTQLPLTLASSSSDRTALICAFILSTAIGFPPHDSGSAAIRQFLETAVKGLGLIPGTVGRFDSSNGFRVPHIGWNALQITKDSGILDDVGNDHVYFVHSYRAMPSDDNSEWISSTCDYGDKFIASITRGNVHAVQFHPEKSGGKCWSLYFEKILESKVKHDKGGLDTILCTSSVSQKPGEVKASKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTNENEVRNLGKPVDLAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFTDSTGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYLRTGVKTGKTSLEQISRVYGNQAVVVSIDPRRVYVKDPNDVQLKTVRVSNPGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDVDLIKLISDAVSIPVIASSGAGAPAHFSEVFNKTNASAALAAGIFHRKEVLLLFHYFLKS 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02509 641 CDD HisF 339 631 IPR004651 GO:0000105|GO:0000107
Vimu2g02509 641 FunFam Imidazole glycerol phosphate synthase hisHF 339 635 - -
Vimu2g02509 641 Pfam Glutamine amidotransferase class-I 53 294 IPR017926 -
Vimu2g02509 641 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 50 306 IPR010139 GO:0000105|GO:0016763
Vimu2g02509 641 SUPERFAMILY Ribulose-phoshate binding barrel 336 631 IPR011060 -
Vimu2g02509 641 CDD GATase1_IGP_Synthase 51 293 IPR010139 GO:0000105|GO:0016763
Vimu2g02509 641 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 333 631 - -
Vimu2g02509 641 SUPERFAMILY Class I glutamine amidotransferase-like 50 305 IPR029062 -
Vimu2g02509 641 Pfam Histidine biosynthesis protein 340 631 IPR006062 GO:0000105
Vimu2g02509 641 Gene3D - 47 317 IPR029062 -
Vimu2g02509 641 Gene3D Aldolase class I 339 634 IPR013785 -
Vimu2g02509 641 PIRSF IGPS_HisHF 48 157 IPR014640 GO:0000105|GO:0000107|GO:0016763|GO:0016833
Vimu2g02509 641 PIRSF IGPS_HisHF 192 634 IPR014640 GO:0000105|GO:0000107|GO:0016763|GO:0016833
Vimu2g02509 641 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 50 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02509 Vimu-Chr2 21061789 21077388 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02509 K01663 - gmx:100500353 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02509 2 21061789 21077388 Vimu2g02509 2 21061789 21077388 ECH