Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03881 ATGTTTGGTGTCGTAAGACGAAGGGTTGCTTCTGGAGGCACATCTTCGTCAGGGCTGAAATTCAGGTCTGGTCCTGCTAGAGTTTCTTCCGTTTTGGAAAAAGAGaTTGCGATAAGCTCAGGAGGATGTGGGAATATCCGGAATTTCTGTCATATAACACCTGTGAGTGCTCTAATAACCTTATTGCTGTGCAGGGACATTTTTCATCAAGAGGCTTTGATTCTAACATGGAAGCGTTCATTTTCTTCGGATAGTGGAGATAATgttgatgttgtggtccctccaTTGGCTGAATCCATCGAGGATGGGACTCTTGCAAAATTTCTGAAGAGGCCTGGTGACAGGGTTAATGTTGATGAACCAATTGCTCAAATTGAAACAGATAAGGTGACAATTGATGTTACGAGTCCCGAGTCAGGTGTGATTCTGAAGCTTCTAGCCAATGAAGGAGATACTGTTGAGCCAGGTAACAAGATAGCAATCATTTCAAGGTCTGCTGATGCTACAACTCACATTGCACCATCTGAGAATGCACCTGAGAAACCTGCTCCTAAGCCAACTCCAAAGGTTAGTGAGCCAGAGAAGAAAACTCCTAAAGTTGAAATTACTACAACAGAGAAGCCAAAAGCACCTACTCCACCAAGCTCTCCAAGTGAGCCACAACTTCCTCCTAAGGATAGAGAAAGACGAGTTCCTATGACAAGACTTCGGAAGCGGGTTGCTACACGATTGAAGGATTCCCAAAACACATATGCTATGCTGACAACCTTCAATGAAGTTGATATGACTAATTTGATGAAGCTCCGTGCTGATCACAAGGATGCTTTTGTTGAAAAGCATGGAGTCAAATTGGGACTTATGTCCGGGTTTATCAAAGCTGCTGTCAATGCACTTCAATATCAACCGATTGTAAATGCAGTCATTGATGGGGATGATATTATATACAGAGATTACATCGATATCAGCATAGCTGTTGGGACTTCAAAGGGACTTGTTGTTCCTGTTATCCGCAATGCTGATACAATGAACTTTGCGGATATAGAAAAACAGATCAACACTTTTGCAAAGAAGGCTAATGCTGGAACTTTATCAATTGATGAGATGGCTGGAGGCACTCTTACAATATCAAATGGTGGTGTTTATGGCAGTCTTTTGAGTACACCTATTATCAACCCCCCTCAGTCGGCAATCGTGGGTATGCATTCCATAGTGACCCGTCCAATGGTTGTTGGAGGAGTTGTTGTTCCAAGGCCAATGATGAACCTTGCTCTAACATATGACCATAGAATCATTGATGGAAGAGAGGCAGTGTTCTTTTTGAGACGTATCAAAGATTGCGTGGAGGACCCTCTCAGGCTTTTGCTCGACCTATAA 1374 0.4221 MFGVVRRRVASGGTSSSGLKFRSGPARVSSVLEKEIAISSGGCGNIRNFCHITPVSALITLLLCRDIFHQEALILTWKRSFSSDSGDNVDVVVPPLAESIEDGTLAKFLKRPGDRVNVDEPIAQIETDKVTIDVTSPESGVILKLLANEGDTVEPGNKIAIISRSADATTHIAPSENAPEKPAPKPTPKVSEPEKKTPKVEITTTEKPKAPTPPSSPSEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTYAMLTTFNEVDMTNLMKLRADHKDAFVEKHGVKLGLMSGFIKAAVNALQYQPIVNAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADTMNFADIEKQINTFAKKANAGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAIVGMHSIVTRPMVVGGVVVPRPMMNLALTYDHRIIDGREAVFFLRRIKDCVEDPLRLLLDL 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03881 457 CDD lipoyl_domain 89 162 - -
Tsu05g03881 457 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 227 455 IPR001078 GO:0016746
Tsu05g03881 457 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 113 142 IPR003016 -
Tsu05g03881 457 Gene3D - 87 165 - -
Tsu05g03881 457 Pfam Biotin-requiring enzyme 90 162 IPR000089 -
Tsu05g03881 457 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 1 457 - -
Tsu05g03881 457 MobiDBLite consensus disorder prediction 1 23 - -
Tsu05g03881 457 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 1 457 - -
Tsu05g03881 457 MobiDBLite consensus disorder prediction 173 235 - -
Tsu05g03881 457 MobiDBLite consensus disorder prediction 187 203 - -
Tsu05g03881 457 Gene3D - 213 452 IPR023213 -
Tsu05g03881 457 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 200 456 IPR006255 GO:0004149|GO:0006099|GO:0045252
Tsu05g03881 457 ProSiteProfiles Biotinyl/lipoyl domain profile. 88 163 IPR000089 -
Tsu05g03881 457 SUPERFAMILY Single hybrid motif 89 181 IPR011053 -
Tsu05g03881 457 SUPERFAMILY CoA-dependent acyltransferases 227 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03881 Tsu-Chr5 49852771 49857979 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03881 59 455 Acyl Lipid Metabolism Gene Families AT1G54220 27.966 1.41e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03881 K00658 - gmx:100799149 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03881 05 49852771 49857979 Tsu05g03881 05 49852771 49857979 ECH