Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3303 ATGTTTGGTGTTGTTAGACGAAGGGTTGCTTATGGAAGCACATCTTCGTTGCTGAAAATTCGGTCCGGCACAACTAGAGTTTCTTCTGTTCTCGAAAAAGAGGTTGCATTAAGCTCAGGAGGATGTGGGAATATCCGAAATTTCTGTCATATAACACCTGGACGCTGGATTAATTCAAAACCTATAAGGGACATTTTTCATCAAGAGGCTTCCATTCAAACATGGAAGCGTTCATTTTCTTCAGATAATGGAGATAATGTTGATGTTGTTGTCCCTCCATTGGCTGAATCCATCGAGGATGGGACTCTAGCAAAATTTCTGAAGAGGCCTGGTGACAAGGTTAATGTTGATGAACCAATTGCTCAAATTGAAACAGATAAGGTGACAATCGATGTTCCAAGTCCTGAGTCAGGTGTGATTCTGAAGCTTCTAGCCAATGAAGGGGATACTGTTGCACCAGGTAACAAAATAGCAATCATTTCAAGGTCTGCTGATGCTACAACCCACGTTGCACCATCTGAGACTTCACCTCAGAAACCTGCTCCTAAGCAAACCCCAAAGGCTAGTGAGCCAGAGGAGAAGAAAGCTCCTAAAGTTGAAACTACAACAGAGAAGCCTAAAACACCTGCTCCACAAAGCTCTCCAACTGAGCCACAGCTTCCTCCTAAGGAAAGAGAAAGACGAGTTCCTATGACAAGGCTTCGGAAACGGGTTGCTCAACGGTTGAAGGATTCCCAAAACACATTTGCTATGCTGACAACCTTCAATGAAGTTGATATGACTAATTTGATGAAGCTCCGTGCTGATTATAAGGATGCTTTCGTTGAAAAGCATGGAGTCAAATTGGGACTTATGTCTGGGTTTATCAAAGCTGCTGTCAATGCACTTCAATATCAACCGATTGTAAATGCGGTCATTGATGGGGATGATATTATATACAGAGATTATATTGATATCAGCATAGCTGTTGGAACTCCGAAGGGACTTGTTGTGCCTGTTATCCGTGATGCGGATAAAATGAACTTTGCAGATATAGAAAAACAGATCAATATTTTTGCAAAGAAGGCTAATGCTGGAACTTTATCAATTGATGAGATGGCTGGAGGCACTCTTACAATATCAAATGGTGGTGTTTATGGAAGTCTTTTGAGTACCCCTATTATCAACCCACCTCAGTCGGCAATCTTGGGTATGCATTCGATTGTGAGCCGTCCCGCAGTTGTTGGTGGAAATGTTGTTCCAAGGCCATTGATGTACATTGCTCTAACATATGACCATAGAATCATTGATGGAAGAGAGGCAGTGTTCTTTTTGAGACGTATCAAAGATACCGTGGAGGACCCTCGCAGGCTTTTGCTCGACATATAA 1368 0.4232 MFGVVRRRVAYGSTSSLLKIRSGTTRVSSVLEKEVALSSGGCGNIRNFCHITPGRWINSKPIRDIFHQEASIQTWKRSFSSDNGDNVDVVVPPLAESIEDGTLAKFLKRPGDKVNVDEPIAQIETDKVTIDVPSPESGVILKLLANEGDTVAPGNKIAIISRSADATTHVAPSETSPQKPAPKQTPKASEPEEKKAPKVETTTEKPKTPAPQSSPTEPQLPPKERERRVPMTRLRKRVAQRLKDSQNTFAMLTTFNEVDMTNLMKLRADYKDAFVEKHGVKLGLMSGFIKAAVNALQYQPIVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRDADKMNFADIEKQINIFAKKANAGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPAVVGGNVVPRPLMYIALTYDHRIIDGREAVFFLRRIKDTVEDPRRLLLDI* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3303 455 Pfam Biotin-requiring enzyme 88 160 IPR000089 -
Mtr5g3303 455 MobiDBLite consensus disorder prediction 166 183 - -
Mtr5g3303 455 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 225 453 IPR001078 GO:0016746
Mtr5g3303 455 Gene3D - 85 163 - -
Mtr5g3303 455 SUPERFAMILY CoA-dependent acyltransferases 225 454 - -
Mtr5g3303 455 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 198 454 IPR006255 GO:0004149|GO:0006099|GO:0045252
Mtr5g3303 455 ProSiteProfiles Biotinyl/lipoyl domain profile. 86 161 IPR000089 -
Mtr5g3303 455 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 1 455 - -
Mtr5g3303 455 MobiDBLite consensus disorder prediction 186 202 - -
Mtr5g3303 455 Gene3D - 210 451 IPR023213 -
Mtr5g3303 455 CDD lipoyl_domain 87 160 - -
Mtr5g3303 455 SUPERFAMILY Single hybrid motif 87 178 IPR011053 -
Mtr5g3303 455 MobiDBLite consensus disorder prediction 164 233 - -
Mtr5g3303 455 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 1 455 - -
Mtr5g3303 455 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 111 140 IPR003016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3303 Mtr-Chr5 41918874 41926056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3303 63 453 Acyl Lipid Metabolism Gene Families AT1G54220 28.540 3.33e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3303 K00658 - gmx:100799149 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3303 5 41918874 41926056 Mtr5g3303 5 41918874 41926056 ECH