Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0332 ATGTTTGGTGTTGTAAGACGAAGGGTTGCTTCTGGCGGCACATCTTCGTTGCTTGGTCAGTCTGGGCTGAAATTAAGGTCCGGTCCTGCTAGGGTTTCTTCCATTTTGGAAAAAGAGATTGCATTAAGCTCAGGAGGTTGTCGGAATGTCCGGAATTTCAGTCACATAACACCTGGACGCTGGATTAATTCCAAACCTATAAGGGATGTCTTTCATCAGGAGGTTTCCATATGGAGGCGTTCATTTTCTTCGGATAATGGAGATACTGTTGACGTTGTGGTGCCTCCCTTGGCTGAATCCATCGAAGATGGGACTCTTGCAAAATTTCTGAAGAGGCCTGGTGACAGGGTTGCTGTTGATGAACCAATTGCTCAAATTGAAACAGATAAGGTGACAATTGACGTTTCAAGTCCCGAGTCAGGTGTTATTTTGAAGCTTCTAGCCAATGAAGGTGACACTGTTGAGCCAGGTCACAAGATAGCAATCATATCAAGGTCTGCTGATGCTACTCATGTTGCGCCATCTGAGTCAGCACCTGAAAAACCTGCTCCCAAGCCAACTCCAAAGGCTAGTGAACCCGAGGAGAAGAAAGCTCCTAAAGTTGAAACTACTACGAAAGAGAAGCCTAAAGCACCTGCTCCTCAAAGCTCTCCATCTGAGCCACAACTTCCTCCTAAGGAAAGAGAAAGACGAGTTCCTATGACAAGGATTCGGAAACGGGTTGCTACACGGTTGAAGGATTCCCAAAACACATATGCTATGTTGACAACCTTCAATGAAGTTGATATGTCTAATTTAATGAAACTCCGTGCTGATTATAAGGATGCTTTTGTTGAAAGGCATGGAGTCAAATTGGGACTTATGTCTGGATTTATCAAAGCTGCTGTCAATGCACTTCAACATCAACCGATTATAAATGCCGTCATTGATGGGGATGATATTATATACAGAGATTATATTGATATCAGCATAGCTGTTGGAACTCCAAAGGGACTTGTTGTGCCAGTTATCCGGAATGCTGATACAATGAACTTTGCGGATATAGAAAAACAGATCAATACTTTTGCAAAGAAGGCTAATGCTGGAACTTTATCAATTGATGAGATGGCTGGAGGCACTCTAACAATATCAAATGGTGGTGTTTATGGCAGCCTTTTAAGTACACCTATTATCAACCCTCCTCAGTCGGCAATCTTGGGTATGCATTCAATTGTGAGCCGCCCAGCTGTTGTTGGAGGAGTGGTTGTTCCAAGGCCACTGATGTACATTGCTCTAACATATGACCATAGAATCATTGATGGAAGAGAGGCAGTGTTCTTTCTACGACGCATCAAAGATACTGTGGAGGACCCTCGCAGGCTTTTGCTCGACATATAA 1377 0.4357 MFGVVRRRVASGGTSSLLGQSGLKLRSGPARVSSILEKEIALSSGGCRNVRNFSHITPGRWINSKPIRDVFHQEVSIWRRSFSSDNGDTVDVVVPPLAESIEDGTLAKFLKRPGDRVAVDEPIAQIETDKVTIDVSSPESGVILKLLANEGDTVEPGHKIAIISRSADATHVAPSESAPEKPAPKPTPKASEPEEKKAPKVETTTKEKPKAPAPQSSPSEPQLPPKERERRVPMTRIRKRVATRLKDSQNTYAMLTTFNEVDMSNLMKLRADYKDAFVERHGVKLGLMSGFIKAAVNALQHQPIINAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADTMNFADIEKQINTFAKKANAGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPAVVGGVVVPRPLMYIALTYDHRIIDGREAVFFLRRIKDTVEDPRRLLLDI* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0332 458 MobiDBLite consensus disorder prediction 223 238 - -
Psa2g0332 458 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 228 456 IPR001078 GO:0016746
Psa2g0332 458 Gene3D - 88 166 - -
Psa2g0332 458 Gene3D - 213 454 IPR023213 -
Psa2g0332 458 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 200 457 IPR006255 GO:0004149|GO:0006099|GO:0045252
Psa2g0332 458 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 1 458 - -
Psa2g0332 458 SUPERFAMILY Single hybrid motif 89 182 IPR011053 -
Psa2g0332 458 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 114 143 IPR003016 -
Psa2g0332 458 MobiDBLite consensus disorder prediction 167 238 - -
Psa2g0332 458 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 1 458 - -
Psa2g0332 458 CDD lipoyl_domain 90 163 - -
Psa2g0332 458 Pfam Biotin-requiring enzyme 91 163 IPR000089 -
Psa2g0332 458 SUPERFAMILY CoA-dependent acyltransferases 228 457 - -
Psa2g0332 458 ProSiteProfiles Biotinyl/lipoyl domain profile. 89 164 IPR000089 -
Psa2g0332 458 MobiDBLite consensus disorder prediction 187 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0332 Psa-Chr2 12698369 12703856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0332 68 456 Acyl Lipid Metabolism Gene Families AT1G54220 29.462 9.90e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0332 K00658 - gmx:100799149 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g0332 2 12698369 12703856 Psa2g0332 2 12698369 12703856 ECH