Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0272 ATGTTTGGTGTCATAAGGCGGAGGGTTGCTTCTCGCAGCCCATCTCCTTTGGTTCTGGGTCAGTCAGTGCAGAAATTTCGCTCTGGACCTTCAGCTCCTGCACGAGTTTCTTCCATTGTGGAAAAAGAGGTTGCATTTCATTCAGGACTAGGTGGAAATGTCCGGAACTTCTGTCATTTGACACCTGGATGCAGGGTTAATTTAAAGCCTATGAGGGAGGTTTTTGGTCAAGAGGCTACCATGCAAACCTTGAGGCGTCCATTTTCATCGGAAAGTGGAGATACTGTTGATGTTGTGGTCCCTCCTTTGGCTGAATCTATTGCTGATGGAACTCTGGCAAAATTTTTGAAGAGGGCTGGTGACCGGGTTAATGTTGATGAAGCAATAGCTCAAATTGAAACAGACAAGGTGACCATTGATGTTTCTAGTCCTGAGTCAGGTGTGATTGTGAAGCTTCTGGCCAATGAAGGGGATACCGTTGAGCCAGGTAACAAGATAGCAATTATTTCAAGGTCTGCTGATGCTACAACTCACGTTGCACCATCTGAGACTACGTCTGAGAAAGCTGCTCCTCAGCCAACACCAAAGGTTAGTGAGGAGAAGAAAGCACCTAAAGTTGAAGCTGCACCTGCACCTGCGACAGAGAAGCCCAAAGCACCTCCTGCTCCACAGAGGTCTCCTACTGAACCACAGCTTCCCCCTAAGGAAAGGGAAAGACGGGTTCCTATGACAAGGCTTCGTAAACGTGTTGCTACACGATTGAAGGATTCCCAGAACACATTTGCCATGCTGACAACATTCAATGAAGTTGATATGACTAATTTGATGAAGCTCCGAGCTGATTATAAGGATACTTTTGTTGAAAAGCATGGAGTCAAATTGGGACTCATGTCCGGGTTTGTCAAAGCCGCTGTCAATGCACTCCAACATCAGCCAATTGTAAATGCAGTTATTGATGGGGATGACATCATATACAGAGATTACATAGATATCAGCATAGCTGTTGGTACTTCAAAGGGCCTTGTTGTGCCAGTTATCCGCAATGCTGATACCATGAACTTTGCGGATATAGAAAAGCAGATCAATGCTTTTGCTAAGAAGGCAAACGATGGAACTCTATCAATTGATGAAATGGCTGGAGGCACTCTTACAATATCCAACGGTGGTGTTTATGGGAGCCTTTTGAGTACTCCTATCATCAACCCCCCTCAGTCGGCAATCTTGGGCATGCACTCCATAGTGAGCCGTCCTATGGTTGTTGGGGGAAATGTTGTCCCAAGGCCAATGATGTACGTTGCTCTAACATATGACCACAGAATAATAGATGGAAGAGAGGCAGTGTTCTTTTTGCGACGCATCAAGGATATCGTCGAGGATCCTCGCAGGCTTCTGCTAGACATATAA 1404 0.4573 MFGVIRRRVASRSPSPLVLGQSVQKFRSGPSAPARVSSIVEKEVAFHSGLGGNVRNFCHLTPGCRVNLKPMREVFGQEATMQTLRRPFSSESGDTVDVVVPPLAESIADGTLAKFLKRAGDRVNVDEAIAQIETDKVTIDVSSPESGVIVKLLANEGDTVEPGNKIAIISRSADATTHVAPSETTSEKAAPQPTPKVSEEKKAPKVEAAPAPATEKPKAPPAPQRSPTEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRADYKDTFVEKHGVKLGLMSGFVKAAVNALQHQPIVNAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADTMNFADIEKQINAFAKKANDGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGNVVPRPMMYVALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0272 467 SUPERFAMILY CoA-dependent acyltransferases 237 466 - -
Dod08g0272 467 MobiDBLite consensus disorder prediction 176 246 - -
Dod08g0272 467 MobiDBLite consensus disorder prediction 231 246 - -
Dod08g0272 467 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 237 465 IPR001078 GO:0016746
Dod08g0272 467 MobiDBLite consensus disorder prediction 176 192 - -
Dod08g0272 467 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 1 467 - -
Dod08g0272 467 MobiDBLite consensus disorder prediction 214 230 - -
Dod08g0272 467 CDD lipoyl_domain 96 169 - -
Dod08g0272 467 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 120 149 IPR003016 -
Dod08g0272 467 SUPERFAMILY Single hybrid motif 95 186 IPR011053 -
Dod08g0272 467 ProSiteProfiles Biotinyl/lipoyl domain profile. 95 170 IPR000089 -
Dod08g0272 467 Pfam Biotin-requiring enzyme 97 169 IPR000089 -
Dod08g0272 467 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 215 466 IPR006255 GO:0004149|GO:0006099|GO:0045252
Dod08g0272 467 Gene3D - 94 172 - -
Dod08g0272 467 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 1 467 - -
Dod08g0272 467 Gene3D - 223 463 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0272 Dod-Chr8 2911352 2917997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0272 72 465 Acyl Lipid Metabolism Gene Families AT1G54220 29.194 6.92e-44 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0272 K00658 - gmx:100799149 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0272 08 2911352 2917997 Dod08g0272 08 2911352 2917997 ECH