Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0629 ATGTTAATGGAGAACATTAGATTTCAGAGAGATAACCAGAAGGTGCAAACTCCAGAAGACATTCTAAATGCAAATTGCCTTATTTTTCCAGGCGTTGGGGCATTTGCTGCAGCCATGGATGTACTAAACAAGAAAGGGATGGCTGAAGCTCTATGTACTTACATTGAGAATGATCGCCCATTTTTAGGCATTTGTCTTGGGCTACAGCTACTTTTTGAGTCCAGTGAGGAAAATGGACCAGTGAGAGGTCTTGGCTTGATACCTGGTGTTGTTGGGCGTTTTGACTCAACTAATGGTTTCAGAGTACCTCATATTGGATGGAATGCTTTACACACAGTGAAAGACTCTGAAATTTTGGATGATATTGGAAAGCGTCATGTCTATTTTGTTCATTCTTACCGTGCCATGCCATCAAATGATAACAAAGAGTGGGTTTCATCTACTTGCAATTATGGTGATAATTTCATAGCATCAGTCAGAAGGGGAAATGTGCATGCAGTTCAGTTTCATCCAGAGAAGAGTGGAGATGTCGGGCTGTCTATATTGAGAAGGTTCTTGTATCCAAAATCTTCCACAACAAAGAAACCAGGGGAAGGGAGGGCTTCAAAACTTGCAAAAAGGGTAATTGCTTGTCTTGATGTGAGGACAAATGATAAAGGAGACCTTGTTGTAACCAAAGGAGACCAGTATGATGTAAGAGAAAATACAGGAGAGAATGAGGTAAGGAACCTTGGCAAGCCGGTGGAGCTTGCTGGACAGTATTACATAGATGGAGCTGATGAGGTCAGTTTTCTGAATATTACCGGTTTCCGAGACTTCCCTTTAGGTGATTTGCCCATGTTGGAGGTATTGAGATACACATCAGAAAATGTTTTTGTACCATTGACAGTCGGAGGTGGAATTAGAGATTTTACAGATGCAAATGGCAGGTATTATTCTAGTTTGGAAGTTGCTTCAGAATATTTCAGGTCAGGGGCAGATAAAATTTCTATTGGAAGTGATGCAGTTTATGCTGCTGAAGAATATATAAGAACTGGAGTGAAGACCGGAAAGACCAGCTTAGAACAGATTTCAAGAGTTTATGGAAACCAGGCAGTGGTTGTAAGCATTGATCCCCGTAGGGTTTACATCAATGCTCCTGATGATGTAGAGTTCAAGGCTGTTAGGGTGACAAACCCAGGGCCAAATGGAGAGGAATATGCCTGGTACCAGTGCACTGTTAATGGTGGGCGAGAAGGTAGACCAATTGGAGCTTATGAGCTTGCAAAAGCAGTTGAAGAGCTGGGAGCTGGAGAAATACTACTCAACTGCATTGATTGTGATGGTCAAGGGAAAGGATTTGATATAGATTTAATAAAGCTGATCTCAGATGCTGTGAGCATTCCTGTGATTGCAAGTAGTGGTGCGGGTGTAGTTGAGCATTTCTCAGAGGTTTTCAAGAAAACAAATGCATCTGCTGCTCTTGCAGCTGGCATTTTCCACCGGAAGGAGGTACCCATTCAGTCTGTCAAGGAGCACTTGTTAGAGACAGGCATAGAAGTCAGAATGTAA 1551 0.4223 MLMENIRFQRDNQKVQTPEDILNANCLIFPGVGAFAAAMDVLNKKGMAEALCTYIENDRPFLGICLGLQLLFESSEENGPVRGLGLIPGVVGRFDSTNGFRVPHIGWNALHTVKDSEILDDIGKRHVYFVHSYRAMPSNDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSILRRFLYPKSSTTKKPGEGRASKLAKRVIACLDVRTNDKGDLVVTKGDQYDVRENTGENEVRNLGKPVELAGQYYIDGADEVSFLNITGFRDFPLGDLPMLEVLRYTSENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIRTGVKTGKTSLEQISRVYGNQAVVVSIDPRRVYINAPDDVEFKAVRVTNPGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIDLIKLISDAVSIPVIASSGAGVVEHFSEVFKKTNASAALAAGIFHRKEVPIQSVKEHLLETGIEVRM* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0629 516 Gene3D Aldolase class I 209 516 IPR013785 -
Vvi19g0629 516 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 201 516 - -
Vvi19g0629 516 FunFam Imidazole glycerol phosphate synthase hisHF 206 516 - -
Vvi19g0629 516 NCBIfam imidazole glycerol phosphate synthase subunit HisF 204 515 IPR004651 GO:0000105|GO:0000107
Vvi19g0629 516 Pfam Glutamine amidotransferase class-I 20 185 IPR017926 -
Vvi19g0629 516 Gene3D - 6 208 IPR029062 -
Vvi19g0629 516 CDD HisF 206 509 IPR004651 GO:0000105|GO:0000107
Vvi19g0629 516 PIRSF IGPS_HisHF 3 516 IPR014640 GO:0000105|GO:0000107|GO:0016763|GO:0016833
Vvi19g0629 516 NCBIfam imidazole glycerol phosphate synthase subunit HisH 9 186 IPR010139 GO:0000105|GO:0016763
Vvi19g0629 516 ProSiteProfiles CobBQ-type GATase domain profile. 1 178 - -
Vvi19g0629 516 SUPERFAMILY Ribulose-phoshate binding barrel 203 515 IPR011060 -
Vvi19g0629 516 CDD GATase1_IGP_Synthase 15 186 IPR010139 GO:0000105|GO:0016763
Vvi19g0629 516 SUPERFAMILY Class I glutamine amidotransferase-like 15 187 IPR029062 -
Vvi19g0629 516 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 1 195 - -
Vvi19g0629 516 Pfam Histidine biosynthesis protein 207 498 IPR006062 GO:0000105
Vvi19g0629 516 FunFam Imidazole glycerol phosphate synthase hisHF 2 208 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0629 K01663 - vvi:100262276 1010.75