Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2519 ATTAAACACAGGAAATGCAATTATAGAGAGAGAATAGAATATTGTTCTTCAGAACTCTGTAGGCGGCGATCTCCTTTGTCTCCGTTCCATCCTCAACCCTATCTTGCGATCTGCGTTTGGCGTTCAGCGGTCAGAAGTCCGAAGGACAAAGAAGAGATTCCTGACAGTGTAATCATGTTTGGTATCGTAAGGCGGAGGGTTGCTTCGGGCAACCTGTCTCCTTGGTTGCTAGGCCAGTCAGCTCAGAAAATTCGGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCGTTGTGGAAAAGGAGATTGCATTTCGTTCAGGCGGATGTGGATTTGTTCGGAACTTCAGTCATATAACACCTGGATGCTGGATTAATTCAAAGCCTATGAGGGTGATCTTTCATCCAGAGGCAACTGTTCAAACATGGGGGCGTCTATTTTCTTCAGAAAGTGGAGATACGGTTGATGTTGTGGTCCCTCCTTTGGCTGAATCTATCTCTGATGGAACTCTGGCTCAATTTTTGAAGAGGCCTGGTGACAGGGTTAATGTTGACGAGCCAATTGCTCAAATTGAAACAGATAAGGTGACAATTGATGTTAATAGTCCTGAGTCAGGCGTGATTCTGAAGCTTCTAGCCAACGAAGGTGATACTGTTGAGCCGGGTCATAAGATAGCAATCATTTCAAGGTCTGGTGATGCAACTCACGTTGCCCCATCTGAGACTACATCTGAGAAAGCTTCTCCTCAGCCAACCCAAAAGGTTAGCGAGGAGAAGAAAGCTCCCAAAGTTGAAACTGCTCCTGCTAAAGAGAAGCCCAAAGCACCTCCTGCCACTCTAAAGTCTCCCACCGAGCCCCAGCTTCCTCCTAAAGAAAGAGAAAGACGACTCCGTGCTGATTATAAGGATGCTTTTGTTGAAAAACATGGAGTCAAATTGGGGCTTATGTCTGGCTTTATCAAAGCTGCTGTCAATGCACTTCAATATCAGCCGATTGTCAATGCAGTCATTGATGGGGATGATATTATATACAGAGATTATATAGATATCAGCGTAGCTGTTGGTACTTCGAAGGGTCTCGTCGTGCCAGTTATCCGCAATGCTGATACCATGAACTTTGCTGATATAGAAAAGCAGATCAATACTTTTGCAAAGAAGGCAAATGATGGAAGTTTATCCATTGACGAGATGGCCGGAGGCACTCTCACAATATCTAATGGTGGTGTTTATGGAAGCCTTTTGAGCACACCTATCATCAACCCCCCTCAGTCTGCAATCTTGGGTATGCATTCGATAGTGAGCCGTCCAATGGTTGTTGGGGGAAGTATTGTCCCAAGACCAATGATGTACGTGGCTCTAACATATGACCACAGAATTATTGATGGAAGAGAGGCAGTGTTCTTTCTGCGACGCATCAAAGATATTGTGGAGGATCCTCGCAGGCTTCTGCTTGACATATAA 1458 0.452 IKHRKCNYRERIEYCSSELCRRRSPLSPFHPQPYLAICVWRSAVRSPKDKEEIPDSVIMFGIVRRRVASGNLSPWLLGQSAQKIRSGPSVSARASSVVEKEIAFRSGGCGFVRNFSHITPGCWINSKPMRVIFHPEATVQTWGRLFSSESGDTVDVVVPPLAESISDGTLAQFLKRPGDRVNVDEPIAQIETDKVTIDVNSPESGVILKLLANEGDTVEPGHKIAIISRSGDATHVAPSETTSEKASPQPTQKVSEEKKAPKVETAPAKEKPKAPPATLKSPTEPQLPPKERERRLRADYKDAFVEKHGVKLGLMSGFIKAAVNALQYQPIVNAVIDGDDIIYRDYIDISVAVGTSKGLVVPVIRNADTMNFADIEKQINTFAKKANDGSLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGSIVPRPMMYVALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2519 485 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 295 483 IPR001078 GO:0016746
Aed3g2519 485 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 295 485 - -
Aed3g2519 485 MobiDBLite consensus disorder prediction 234 250 - -
Aed3g2519 485 Gene3D - 152 229 - -
Aed3g2519 485 MobiDBLite consensus disorder prediction 230 293 - -
Aed3g2519 485 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 178 207 IPR003016 -
Aed3g2519 485 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 295 485 - -
Aed3g2519 485 ProSiteProfiles Biotinyl/lipoyl domain profile. 153 228 IPR000089 -
Aed3g2519 485 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 59 296 - -
Aed3g2519 485 Gene3D - 293 481 IPR023213 -
Aed3g2519 485 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 59 296 - -
Aed3g2519 485 SUPERFAMILY CoA-dependent acyltransferases 295 484 - -
Aed3g2519 485 CDD lipoyl_domain 154 227 - -
Aed3g2519 485 MobiDBLite consensus disorder prediction 251 269 - -
Aed3g2519 485 SUPERFAMILY Single hybrid motif 153 245 IPR011053 -
Aed3g2519 485 Pfam Biotin-requiring enzyme 155 227 IPR000089 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2519 Aed-Chr3 27554864 27559836 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2519 302 483 Acyl Lipid Metabolism Gene Families AT1G54220 34.409 2.91e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2519 K00658 - gmx:100799149 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2519 3 27554864 27559836 Aed3g2519 3 27554864 27559836 ECH